Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 AC114876.1-201ENST00000490962 1366 ntBASIC6.94□□□□□ -1.3
DKK3Q9UBP4 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
DKK3Q9UBP4 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 RN7SKP118-201ENST00000364331 330 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 RN7SKP130-201ENST00000364924 301 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 MIR199B-201ENST00000384849 110 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 MIR1204-201ENST00000408388 67 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AL356806.1-201ENST00000422524 916 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 BX119904.3-201ENST00000428194 957 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AP000547.1-201ENST00000454360 617 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC021146.11-201ENST00000503319 491 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC025857.1-201ENST00000525252 377 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC020914.7-201ENST00000594477 545 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC183089.2-201ENST00000637931 916 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AL132656.3-201ENST00000606384 1595 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 LPAL2-203ENST00000454031 2498 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AC233968.1-201ENST00000611212 1300 ntBASIC6.93□□□□□ -1.3
DKK3Q9UBP4 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
DKK3Q9UBP4 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 AL022323.4-201ENST00000623980 13120 ntBASIC6.92□□□□□ -1.3
DKK3Q9UBP4 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 AC107977.1-201ENST00000355745 939 ntBASIC6.92□□□□□ -1.3
DKK3Q9UBP4 RNU4-23P-201ENST00000362839 140 ntBASIC6.92□□□□□ -1.3
DKK3Q9UBP4 RNA5SP382-201ENST00000363355 112 ntBASIC6.92□□□□□ -1.3
DKK3Q9UBP4 RN7SKP191-201ENST00000364713 306 ntBASIC6.92□□□□□ -1.3
DKK3Q9UBP4 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 ASPH-204ENST00000389204 1290 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC6.92□□□□□ -1.3
DKK3Q9UBP4 AL589794.1-201ENST00000424971 390 ntBASIC6.92□□□□□ -1.3
DKK3Q9UBP4 AHCYP8-201ENST00000425108 209 ntBASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms