Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 OR5T3-201ENST00000303059 1023 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 SNORA7A-201ENST00000384765 139 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 CRYGGP-201ENST00000443337 145 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AK5-208ENST00000478255 556 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 RN7SL382P-201ENST00000482631 282 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AC010442.1-201ENST00000515583 816 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AC092944.2-201ENST00000605443 889 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 HTR1DP1-201ENST00000616500 888 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AC025287.2-201ENST00000621911 668 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 CLCA3P-203ENST00000490028 2781 ntBASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4CQ96CF2 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AL079341.1-201ENST00000404701 1207 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AL589794.1-201ENST00000424971 390 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 RPS26P11-201ENST00000463445 348 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 HMGN1P8-201ENST00000463578 288 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 RPS26P6-201ENST00000475156 348 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 RN7SL37P-201ENST00000490461 307 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 CREM-242ENST00000490511 469 ntTSL 2 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AP006587.5-201ENST00000532033 739 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AL713998.2-201ENST00000604538 1198 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 OR1N1-202ENST00000619659 939 ntBASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4CQ96CF2 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 LPAL2-203ENST00000454031 2498 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 CYP2G2P-201ENST00000594920 1485 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 RN7SKP189-201ENST00000365042 330 ntBASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4CQ96CF2 AL136116.2-201ENST00000404020 785 ntBASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms