Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 RBPJP6-201ENST00000411556 1431 ntBASIC6.2□□□□□ -1.42
SOX3P41225 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX3P41225 OR2M1P-201ENST00000318104 951 ntBASIC6.2□□□□□ -1.42
SOX3P41225 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 AL359694.1-201ENST00000403247 604 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX3P41225 AL663061.1-201ENST00000416625 580 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX3P41225 AC239367.3-201ENST00000428996 814 ntBASIC6.2□□□□□ -1.42
SOX3P41225 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
SOX3P41225 RPL12P49-201ENST00000441100 121 ntBASIC6.2□□□□□ -1.42
SOX3P41225 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX3P41225 AKR1D1P1-201ENST00000457236 936 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 AC114324.2-202ENST00000503812 134 ntBASIC6.2□□□□□ -1.42
SOX3P41225 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
SOX3P41225 NACAP5-201ENST00000509863 636 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AC011352.2-201ENST00000514574 1016 ntBASIC6.2□□□□□ -1.42
SOX3P41225 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX3P41225 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX3P41225 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX3P41225 OR9G2P-201ENST00000533326 880 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC6.2□□□□□ -1.42
SOX3P41225 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
SOX3P41225 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX3P41225 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 HNRNPA1P74-201ENST00000560782 835 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AC018558.5-201ENST00000565840 952 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.2□□□□□ -1.42
SOX3P41225 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX3P41225 RPL29P33-201ENST00000587474 316 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC6.2□□□□□ -1.42
SOX3P41225 AC011497.2-201ENST00000600255 639 ntBASIC6.2□□□□□ -1.42
SOX3P41225 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.2□□□□□ -1.42
SOX3P41225 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.2□□□□□ -1.42
SOX3P41225 AP001885.1-201ENST00000621658 558 ntBASIC6.2□□□□□ -1.42
SOX3P41225 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC6.2□□□□□ -1.42
SOX3P41225 AC007603.3-201ENST00000636915 979 ntBASIC6.2□□□□□ -1.42
SOX3P41225 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.2□□□□□ -1.42
SOX3P41225 AC096992.2-201ENST00000609553 1684 ntBASIC6.2□□□□□ -1.42
SOX3P41225 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
SOX3P41225 API5P1-201ENST00000424316 1510 ntBASIC6.2□□□□□ -1.42
SOX3P41225 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 Z97989.1-201ENST00000531702 2421 ntBASIC6.19□□□□□ -1.42
SOX3P41225 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.19□□□□□ -1.42
SOX3P41225 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
SOX3P41225 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 USP9YP3-201ENST00000434481 1766 ntBASIC6.19□□□□□ -1.42
SOX3P41225 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
SOX3P41225 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 RNA5SP321-201ENST00000362722 111 ntBASIC6.19□□□□□ -1.42
SOX3P41225 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SOX3P41225 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SOX3P41225 AL033519.1-201ENST00000407266 307 ntBASIC6.19□□□□□ -1.42
SOX3P41225 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.19□□□□□ -1.42
SOX3P41225 NPM1P36-201ENST00000415681 835 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX3P41225 Z82198.3-201ENST00000421145 199 ntBASIC6.19□□□□□ -1.42
SOX3P41225 FAM183DP-201ENST00000421987 399 ntBASIC6.19□□□□□ -1.42
SOX3P41225 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SOX3P41225 VN1R53P-201ENST00000429536 957 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX3P41225 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX3P41225 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX3P41225 AL031681.1-201ENST00000443304 400 ntBASIC6.19□□□□□ -1.42
SOX3P41225 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.19□□□□□ -1.42
SOX3P41225 RPL26P30-201ENST00000453533 435 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AC015524.1-201ENST00000491585 472 ntBASIC6.19□□□□□ -1.42
SOX3P41225 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.19□□□□□ -1.42
SOX3P41225 AC122713.1-201ENST00000518368 1015 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AC087360.1-201ENST00000518788 616 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX3P41225 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SOX3P41225 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC6.19□□□□□ -1.42
SOX3P41225 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.19□□□□□ -1.42
SOX3P41225 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
SOX3P41225 AC005519.1-201ENST00000554490 601 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AL445383.1-201ENST00000554689 874 ntBASIC6.19□□□□□ -1.42
SOX3P41225 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms