Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL512637.1-201ENST00000439523 1231 ntBASIC10.61□□□□□ -0.71
CUX1P39880 AC016908.1-201ENST00000442571 1219 ntBASIC10.61□□□□□ -0.71
CUX1P39880 DNAJC19P5-201ENST00000443295 316 ntBASIC10.61□□□□□ -0.71
CUX1P39880 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 OR7A15P-201ENST00000449848 1009 ntBASIC10.61□□□□□ -0.71
CUX1P39880 AC090958.1-201ENST00000511122 351 ntBASIC10.61□□□□□ -0.71
CUX1P39880 AC021269.1-201ENST00000526860 705 ntBASIC10.61□□□□□ -0.71
CUX1P39880 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC10.61□□□□□ -0.71
CUX1P39880 AC092130.1-201ENST00000565531 531 ntTSL 4 BASIC10.61□□□□□ -0.71
CUX1P39880 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC10.61□□□□□ -0.71
CUX1P39880 AC010547.6-201ENST00000571789 193 ntBASIC10.61□□□□□ -0.71
CUX1P39880 METTL8-201ENST00000375258 8203 ntTSL 5 BASIC10.61□□□□□ -0.71
CUX1P39880 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 AC007993.1-201ENST00000621298 2430 ntBASIC10.61□□□□□ -0.71
CUX1P39880 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
CUX1P39880 AL139384.2-201ENST00000613809 3590 ntBASIC10.61□□□□□ -0.71
CUX1P39880 AC087501.5-201ENST00000607496 2374 ntBASIC10.61□□□□□ -0.71
CUX1P39880 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC10.6□□□□□ -0.71
CUX1P39880 AL132875.1-201ENST00000403623 949 ntBASIC10.6□□□□□ -0.71
CUX1P39880 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC10.6□□□□□ -0.71
CUX1P39880 FTH1P20-201ENST00000434913 548 ntBASIC10.6□□□□□ -0.71
CUX1P39880 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC10.6□□□□□ -0.71
CUX1P39880 AP006222.1-205ENST00000450734 457 ntBASIC10.6□□□□□ -0.71
CUX1P39880 RPSAP39-201ENST00000467439 883 ntBASIC10.6□□□□□ -0.71
CUX1P39880 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC10.6□□□□□ -0.71
CUX1P39880 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC10.6□□□□□ -0.71
CUX1P39880 RPL7L1P4-201ENST00000513004 707 ntBASIC10.6□□□□□ -0.71
CUX1P39880 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC10.6□□□□□ -0.71
CUX1P39880 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC10.6□□□□□ -0.71
CUX1P39880 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC10.6□□□□□ -0.71
CUX1P39880 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC10.6□□□□□ -0.71
CUX1P39880 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 AC022325.1-201ENST00000502748 2199 ntBASIC10.6□□□□□ -0.71
CUX1P39880 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC10.6□□□□□ -0.71
CUX1P39880 ROBO2-202ENST00000461745 8946 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CUX1P39880 ZNF888-202ENST00000638862 4195 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
CUX1P39880 RNU1-134P-201ENST00000362935 165 ntBASIC10.59□□□□□ -0.71
CUX1P39880 MIR1178-201ENST00000408396 91 ntBASIC10.59□□□□□ -0.71
CUX1P39880 AC008753.1-201ENST00000423096 284 ntBASIC10.59□□□□□ -0.71
CUX1P39880 SUMO2P10-201ENST00000452006 288 ntBASIC10.59□□□□□ -0.71
CUX1P39880 RN7SL629P-201ENST00000489622 285 ntBASIC10.59□□□□□ -0.71
CUX1P39880 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC10.59□□□□□ -0.71
CUX1P39880 AP000648.1-201ENST00000529682 397 ntBASIC10.59□□□□□ -0.71
CUX1P39880 AC005229.3-201ENST00000603438 323 ntBASIC10.59□□□□□ -0.71
CUX1P39880 AL031601.1-201ENST00000605702 394 ntBASIC10.59□□□□□ -0.71
CUX1P39880 AC245014.3-201ENST00000618589 347 ntBASIC10.59□□□□□ -0.71
CUX1P39880 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
CUX1P39880 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
CUX1P39880 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 ZNF493-201ENST00000339914 1665 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC10.59□□□□□ -0.71
CUX1P39880 AP2B1-217ENST00000618940 3415 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX1P39880 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC10.58□□□□□ -0.71
CUX1P39880 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC10.58□□□□□ -0.72
CUX1P39880 AC091390.2-201ENST00000432573 374 ntBASIC10.58□□□□□ -0.72
CUX1P39880 AC245047.1-201ENST00000433276 873 ntBASIC10.58□□□□□ -0.72
CUX1P39880 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC10.58□□□□□ -0.72
CUX1P39880 GEMIN2P1-201ENST00000454246 752 ntBASIC10.58□□□□□ -0.72
CUX1P39880 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC10.58□□□□□ -0.72
CUX1P39880 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC10.58□□□□□ -0.72
CUX1P39880 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC10.58□□□□□ -0.72
CUX1P39880 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC10.58□□□□□ -0.72
CUX1P39880 MRO-208ENST00000588444 866 ntTSL 3 BASIC10.58□□□□□ -0.72
CUX1P39880 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC10.58□□□□□ -0.72
CUX1P39880 AC013244.1-201ENST00000604279 193 ntBASIC10.58□□□□□ -0.72
CUX1P39880 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC10.58□□□□□ -0.72
CUX1P39880 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC10.58□□□□□ -0.72
CUX1P39880 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
CUX1P39880 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 MAPK10-287ENST00000641217 3037 ntBASIC10.58□□□□□ -0.72
CUX1P39880 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC10.58□□□□□ -0.72
CUX1P39880 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX1P39880 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
CUX1P39880 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC10.58□□□□□ -0.72
CUX1P39880 IGKV1D-22-201ENST00000518953 324 ntBASIC10.58□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms