Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.04□□□□□ -1.6
HLA-DMBP28068 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 ZNF402P-201ENST00000404435 3100 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 MIR99A-201ENST00000384906 81 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AL049697.3-201ENST00000406493 982 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 RPL23AP18-201ENST00000416139 468 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AL672212.1-201ENST00000422246 400 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 PPIAP32-201ENST00000449940 472 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AL354714.5-201ENST00000450131 590 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 RPS26P11-201ENST00000463445 348 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 RN7SL390P-201ENST00000470634 284 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 RPS26P6-201ENST00000475156 348 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 PPP1R11P1-201ENST00000486095 376 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 PFN2-213ENST00000494827 793 ntTSL 4 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC139713.1-202ENST00000512366 460 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 MRPS5P3-201ENST00000515577 166 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC113191.1-201ENST00000517759 403 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 OR52K3P-201ENST00000531655 943 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC027796.1-201ENST00000575593 512 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AL157899.1-201ENST00000604110 936 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC006328.2-201ENST00000623198 397 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC012005.2-201ENST00000624333 397 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AP003486.1-201ENST00000525716 3994 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 AC073365.1-203ENST00000641055 1992 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 PARP4P1-201ENST00000435945 2337 ntBASIC5.03□□□□□ -1.6
HLA-DMBP28068 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HLA-DMBP28068 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.03□□□□□ -1.6
HLA-DMBP28068 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 API5P1-201ENST00000424316 1510 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 TMCC1P1-201ENST00000518897 1980 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC009220.2-201ENST00000489759 1751 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AL359694.1-201ENST00000403247 604 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 ALDH7A1P4-201ENST00000412255 178 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 RPS7P12-201ENST00000422385 582 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HLA-DMBP28068 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC5.02□□□□□ -1.61
HLA-DMBP28068 RPL7AP71-201ENST00000451120 739 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 AC133965.1-201ENST00000452984 354 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 RN7SL492P-201ENST00000460700 295 ntBASIC5.02□□□□□ -1.61
HLA-DMBP28068 CARSP2-201ENST00000520688 277 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms