Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CDX1P47902 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
CDX1P47902 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CDX1P47902 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CDX1P47902 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.59□□□□□ -1.52
CDX1P47902 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CDX1P47902 BX284613.1-201ENST00000452221 1641 ntBASIC5.59□□□□□ -1.52
CDX1P47902 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.59□□□□□ -1.52
CDX1P47902 AC123769.1-201ENST00000530992 3192 ntBASIC5.59□□□□□ -1.52
CDX1P47902 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.59□□□□□ -1.52
CDX1P47902 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CDX1P47902 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 AC007068.1-201ENST00000396690 844 ntBASIC5.58□□□□□ -1.52
CDX1P47902 AL137058.2-203ENST00000398039 825 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 CNPY1-202ENST00000406197 560 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 AC098592.2-201ENST00000413158 265 ntBASIC5.58□□□□□ -1.52
CDX1P47902 CBX1P3-201ENST00000413296 527 ntBASIC5.58□□□□□ -1.52
CDX1P47902 MEAF6P1-201ENST00000416092 327 ntBASIC5.58□□□□□ -1.52
CDX1P47902 PPIAP23-201ENST00000420099 497 ntBASIC5.58□□□□□ -1.52
CDX1P47902 GAPDHP69-201ENST00000425504 1008 ntBASIC5.58□□□□□ -1.52
CDX1P47902 RPL14P5-201ENST00000436474 730 ntBASIC5.58□□□□□ -1.52
CDX1P47902 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 RAD1P2-201ENST00000446414 663 ntBASIC5.58□□□□□ -1.52
CDX1P47902 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 EAF2-202ENST00000451944 960 ntTSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 AGKP1-201ENST00000455254 1263 ntBASIC5.58□□□□□ -1.52
CDX1P47902 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 RPSAP7-201ENST00000456871 885 ntBASIC5.58□□□□□ -1.52
CDX1P47902 TREML3P-201ENST00000457327 501 ntBASIC5.58□□□□□ -1.52
CDX1P47902 CBX5P1-201ENST00000468470 561 ntBASIC5.58□□□□□ -1.52
CDX1P47902 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 SNORA48.9-201ENST00000516419 162 ntBASIC5.58□□□□□ -1.52
CDX1P47902 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 DCN-215ENST00000550099 719 ntTSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.58□□□□□ -1.52
CDX1P47902 AC091932.1-201ENST00000569381 427 ntBASIC5.58□□□□□ -1.52
CDX1P47902 RN7SL131P-201ENST00000579043 256 ntBASIC5.58□□□□□ -1.52
CDX1P47902 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC5.58□□□□□ -1.52
CDX1P47902 MIR8082-201ENST00000612488 81 ntBASIC5.58□□□□□ -1.52
CDX1P47902 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CDX1P47902 AL354702.2-202ENST00000641481 890 ntBASIC5.58□□□□□ -1.52
CDX1P47902 MAPK10-350ENST00000641777 965 ntBASIC5.58□□□□□ -1.52
CDX1P47902 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CDX1P47902 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.58□□□□□ -1.52
CDX1P47902 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 AC137056.2-201ENST00000624055 1958 ntBASIC5.58□□□□□ -1.52
CDX1P47902 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CDX1P47902 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.57□□□□□ -1.52
CDX1P47902 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC5.57□□□□□ -1.52
CDX1P47902 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC5.57□□□□□ -1.52
CDX1P47902 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 AC093844.1-201ENST00000514910 1361 ntBASIC5.57□□□□□ -1.52
CDX1P47902 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.57□□□□□ -1.52
CDX1P47902 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
CDX1P47902 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CDX1P47902 RNU6-386P-201ENST00000362650 107 ntBASIC5.57□□□□□ -1.52
CDX1P47902 RNA5SP442-201ENST00000365050 107 ntBASIC5.57□□□□□ -1.52
CDX1P47902 RPL12P1-201ENST00000374520 498 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms