Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC10.64□□□□□ -0.71
CUX1P39880 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
CUX1P39880 AC131392.2-201ENST00000505635 4332 ntBASIC10.64□□□□□ -0.71
CUX1P39880 CR788268.1-201ENST00000603931 1809 ntBASIC10.64□□□□□ -0.71
CUX1P39880 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC10.64□□□□□ -0.71
CUX1P39880 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC10.64□□□□□ -0.71
CUX1P39880 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC10.64□□□□□ -0.71
CUX1P39880 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC10.64□□□□□ -0.71
CUX1P39880 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC10.64□□□□□ -0.71
CUX1P39880 USP40-202ENST00000409945 1946 ntTSL 2 BASIC10.64□□□□□ -0.71
CUX1P39880 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
CUX1P39880 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
CUX1P39880 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
CUX1P39880 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC10.63□□□□□ -0.71
CUX1P39880 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CUX1P39880 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC10.63□□□□□ -0.71
CUX1P39880 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 AC074386.1-201ENST00000476560 767 ntBASIC10.63□□□□□ -0.71
CUX1P39880 AC124945.1-201ENST00000485133 188 ntBASIC10.63□□□□□ -0.71
CUX1P39880 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC10.63□□□□□ -0.71
CUX1P39880 AP003396.4-201ENST00000527574 265 ntBASIC10.63□□□□□ -0.71
CUX1P39880 AC092375.1-201ENST00000550410 637 ntBASIC10.63□□□□□ -0.71
CUX1P39880 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC10.63□□□□□ -0.71
CUX1P39880 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC10.63□□□□□ -0.71
CUX1P39880 AL008723.3-201ENST00000608926 449 ntBASIC10.63□□□□□ -0.71
CUX1P39880 AL352984.2-201ENST00000611153 546 ntBASIC10.63□□□□□ -0.71
CUX1P39880 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
CUX1P39880 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 OXSM-209ENST00000626005 309 ntTSL 3 BASIC10.63□□□□□ -0.71
CUX1P39880 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
CUX1P39880 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
CUX1P39880 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CUX1P39880 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CUX1P39880 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 LRRC37A17P-201ENST00000570311 4693 ntBASIC10.63□□□□□ -0.71
CUX1P39880 DENND2C-202ENST00000393276 5701 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 SDK2-201ENST00000392650 10723 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 FRAS1-201ENST00000325942 7142 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CUX1P39880 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC10.63□□□□□ -0.71
CUX1P39880 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CUX1P39880 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 AC110373.1-201ENST00000505994 3505 ntBASIC10.63□□□□□ -0.71
CUX1P39880 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC10.63□□□□□ -0.71
CUX1P39880 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
CUX1P39880 AC008638.1-201ENST00000506035 866 ntBASIC10.63□□□□□ -0.71
CUX1P39880 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CUX1P39880 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC10.63□□□□□ -0.71
CUX1P39880 MIR6826-201ENST00000617808 98 ntBASIC10.63□□□□□ -0.71
CUX1P39880 AC027348.2-201ENST00000624375 642 ntBASIC10.63□□□□□ -0.71
CUX1P39880 LIPA-203ENST00000371837 2513 ntTSL 2 BASIC10.63□□□□□ -0.71
CUX1P39880 AC130360.2-201ENST00000533477 1556 ntBASIC10.63□□□□□ -0.71
CUX1P39880 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 SHQ1P1-201ENST00000437111 1544 ntBASIC10.62□□□□□ -0.71
CUX1P39880 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 UNC79-201ENST00000256339 8400 ntAPPRIS P2 TSL 5 BASIC10.62□□□□□ -0.71
CUX1P39880 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC10.62□□□□□ -0.71
CUX1P39880 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC10.62□□□□□ -0.71
CUX1P39880 MET-202ENST00000397752 6635 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
CUX1P39880 MIR937-201ENST00000401271 86 ntBASIC10.62□□□□□ -0.71
CUX1P39880 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
CUX1P39880 BX323845.3-201ENST00000428215 527 ntBASIC10.62□□□□□ -0.71
CUX1P39880 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC10.62□□□□□ -0.71
CUX1P39880 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC10.62□□□□□ -0.71
CUX1P39880 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC10.62□□□□□ -0.71
CUX1P39880 SNORD95-201ENST00000579879 68 ntBASIC10.62□□□□□ -0.71
CUX1P39880 MIR6793-201ENST00000612376 63 ntBASIC10.62□□□□□ -0.71
CUX1P39880 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC10.62□□□□□ -0.71
CUX1P39880 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
CUX1P39880 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC10.62□□□□□ -0.71
CUX1P39880 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
CUX1P39880 FLJ42393-201ENST00000623801 2270 ntBASIC10.61□□□□□ -0.71
CUX1P39880 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
CUX1P39880 BDNF-201ENST00000314915 4340 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CUX1P39880 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
CUX1P39880 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
CUX1P39880 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC10.61□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms