Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 RNA5SP140-201ENST00000364524 92 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 RN7SKP188-201ENST00000410789 317 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 GPN3P1-201ENST00000423883 535 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 PSMD10P2-201ENST00000432890 672 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC021006.1-201ENST00000489849 553 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC021146.11-201ENST00000503319 491 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC005519.1-201ENST00000554490 601 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 CTSLP2-201ENST00000580501 394 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC087575.1-201ENST00000585087 229 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HDDC3Q8N4P3 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 SPATA31C1-201ENST00000420021 3895 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 CCRL2-201ENST00000357392 1593 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 PSMA6P1-201ENST00000400275 741 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 OR7E156P-201ENST00000400303 464 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 RN7SL221P-201ENST00000466190 281 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 RPL7AP23-201ENST00000482625 776 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 OR7E158P-201ENST00000524483 910 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC084121.1-201ENST00000533882 835 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC124891.1-201ENST00000536322 519 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC093524.1-201ENST00000564266 1094 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC007066.2-202ENST00000566531 914 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC020978.6-201ENST00000571197 3177 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms