Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 AL096803.1-201ENST00000456921 1021 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 UOX-201ENST00000471089 899 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC7.11□□□□□ -1.27
USP39Q53GS9 HMGN1P15-201ENST00000513870 295 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 SCARNA6-201ENST00000515982 265 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC7.11□□□□□ -1.27
USP39Q53GS9 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC7.11□□□□□ -1.27
USP39Q53GS9 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 MTATP6P24-201ENST00000576835 677 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC7.11□□□□□ -1.27
USP39Q53GS9 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 RPS11-205ENST00000599561 430 ntTSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 AF230666.2-201ENST00000602328 725 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AC009974.1-201ENST00000608881 455 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 AC104307.1-201ENST00000616142 196 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 RAB28P4-201ENST00000622233 665 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AL356863.1-201ENST00000623378 1080 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AC073857.1-201ENST00000625082 1054 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AL049541.2-201ENST00000626377 555 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 AC099654.9-201ENST00000637055 678 ntBASIC7.11□□□□□ -1.27
USP39Q53GS9 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC7.11□□□□□ -1.27
USP39Q53GS9 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
USP39Q53GS9 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC7.11□□□□□ -1.27
USP39Q53GS9 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 MTND5P31-201ENST00000419366 1374 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC138915.4-201ENST00000565549 4147 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC011379.1-201ENST00000508713 3025 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 BTBD7-208ENST00000555525 2328 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 RNU6-167P-201ENST00000384292 106 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC7.1□□□□□ -1.27
USP39Q53GS9 AC244452.1-201ENST00000413798 141 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 RPL7AP51-201ENST00000422016 760 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC000089.1-201ENST00000424559 801 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 CHCHD3P1-201ENST00000425516 676 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC7.1□□□□□ -1.27
USP39Q53GS9 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC7.1□□□□□ -1.27
USP39Q53GS9 RPS7P10-201ENST00000464254 603 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC025181.1-201ENST00000477507 416 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 RPL29P23-201ENST00000486188 442 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 GTF2IP9-201ENST00000502460 301 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 APOBEC3AP1-201ENST00000511396 287 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC093878.1-201ENST00000515630 432 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 RNA5SP318-201ENST00000516352 92 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 RNA5SP473-201ENST00000516402 125 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 RPL10P18-201ENST00000519384 309 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AP001000.1-201ENST00000526843 742 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC7.1□□□□□ -1.27
USP39Q53GS9 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC7.1□□□□□ -1.27
USP39Q53GS9 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC7.1□□□□□ -1.27
USP39Q53GS9 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC7.1□□□□□ -1.27
USP39Q53GS9 AC244034.2-201ENST00000562504 509 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AL713998.2-201ENST00000604538 1198 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 AC018645.2-201ENST00000609151 472 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC005858.3-201ENST00000624756 589 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 AC004808.2-201ENST00000627965 773 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 IPO5-229ENST00000631030 192 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 AL390036.1-203ENST00000635340 894 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 AC068137.4-201ENST00000638485 296 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC7.1□□□□□ -1.27
USP39Q53GS9 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 ACOD1-201ENST00000377462 2165 ntAPPRIS P2 TSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
USP39Q53GS9 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC7.1□□□□□ -1.27
USP39Q53GS9 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC7.1□□□□□ -1.27
USP39Q53GS9 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms