Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 C1orf131-203ENST00000366651 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 CYFIP2-221ENST00000618329 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL365475.1-201ENST00000565135 1949 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 WDR89-204ENST00000620954 2935 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 CFAP61-205ENST00000377306 2017 ntTSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 ZNF334-201ENST00000347606 3890 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 ABCB4-203ENST00000359206 3923 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 LINC02408-201ENST00000400306 1766 ntTSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 RNU4-40P-201ENST00000364351 143 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 RNU1-16P-201ENST00000365477 164 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 FABP9-201ENST00000379071 497 ntAPPRIS P1 TSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 MTCO1P56-201ENST00000401674 224 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 RPS27AP11-201ENST00000402798 447 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 RN7SKP278-201ENST00000410504 342 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC099344.1-201ENST00000433548 492 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AL353754.1-201ENST00000440219 340 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC093157.1-202ENST00000446527 1045 ntTSL 3 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 Z83846.1-201ENST00000446798 265 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC004022.1-201ENST00000447766 1066 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 RN7SL145P-201ENST00000469955 296 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 RN7SL635P-201ENST00000492123 296 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 RNA5SP287-201ENST00000516358 103 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AAMDC-203ENST00000525034 511 ntTSL 3 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 SERPINA15P-201ENST00000529287 266 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC090589.2-201ENST00000532022 332 ntTSL 3 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 COX6CP11-201ENST00000555293 229 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 FDPSP3-201ENST00000556903 1013 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC026464.1-202ENST00000564737 722 ntAPPRIS P5 TSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 CCDC58P1-201ENST00000578567 430 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC060766.6-201ENST00000589099 394 ntTSL 3 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC093074.1-201ENST00000590280 556 ntTSL 4 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 RPS11-202ENST00000594493 575 ntTSL 3 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC021749.1-201ENST00000604322 607 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AL445423.1-201ENST00000609941 536 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC005393.1-201ENST00000617916 584 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 SMAD5-AS1-201ENST00000297163 1816 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 EEF1A1P12-201ENST00000443590 1346 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 EEF1A1P4-201ENST00000359165 1405 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AL080317.3-201ENST00000607434 4315 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AIM2-202ENST00000368130 1529 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 AC130360.2-201ENST00000533477 1556 ntBASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
TRAIPQ9BWF2 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 NACA-216ENST00000550952 2922 ntTSL 2 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 FHL1-203ENST00000370676 833 ntTSL 5 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 PPIAP26-201ENST00000377951 522 ntBASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 GAGE12E-201ENST00000381698 520 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 RNU6-729P-201ENST00000384399 107 ntBASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 AC074117.1-203ENST00000412749 399 ntTSL 3 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC8.43□□□□□ -1.06
TRAIPQ9BWF2 CLIC4P3-201ENST00000422221 752 ntBASIC8.43□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms