Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC7.14□□□□□ -1.27
USP39Q53GS9 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 RN7SKP11-201ENST00000517018 287 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
USP39Q53GS9 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 AC079866.1-201ENST00000534985 1220 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 PRB1-203ENST00000545626 710 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 MTCYBP27-201ENST00000555160 670 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AL109741.3-201ENST00000561748 592 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AC010401.2-201ENST00000575137 4934 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC011447.2-201ENST00000592921 283 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 RPL7AP69-201ENST00000595306 806 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC011500.1-201ENST00000601963 469 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 RPS4XP21-201ENST00000603814 750 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC025811.1-201ENST00000604312 472 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 AC140725.3-201ENST00000616193 880 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 RN7SL126P-201ENST00000616400 299 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 CXADRP3-202ENST00000617265 1100 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 MIR6503-201ENST00000622884 86 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 AC090181.3-201ENST00000624777 1514 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC7.14□□□□□ -1.27
USP39Q53GS9 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC7.14□□□□□ -1.27
USP39Q53GS9 OR51C1P-202ENST00000641159 1444 ntBASIC7.14□□□□□ -1.27
USP39Q53GS9 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
USP39Q53GS9 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 MELK-208ENST00000536987 2125 ntTSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
USP39Q53GS9 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC7.13□□□□□ -1.27
USP39Q53GS9 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
USP39Q53GS9 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 AL359263.1-201ENST00000441188 2796 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 RN7SKP174-201ENST00000363803 330 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 RN7SKP189-201ENST00000365042 330 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 AC026310.1-201ENST00000396004 378 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 RNA5SP155-201ENST00000411154 129 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC7.13□□□□□ -1.27
USP39Q53GS9 TRGV5P-201ENST00000419915 354 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 MYO5BP3-201ENST00000431872 1279 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC7.13□□□□□ -1.27
USP39Q53GS9 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC7.13□□□□□ -1.27
USP39Q53GS9 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC7.13□□□□□ -1.27
USP39Q53GS9 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC7.13□□□□□ -1.27
USP39Q53GS9 RPS26P11-201ENST00000463445 348 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 RN7SL83P-201ENST00000468131 297 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 RPS26P6-201ENST00000475156 348 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC7.13□□□□□ -1.27
USP39Q53GS9 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USP39Q53GS9 B3GNTL1P1-201ENST00000509174 289 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC7.13□□□□□ -1.27
USP39Q53GS9 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 SAA3P-201ENST00000533267 365 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 CD69-203ENST00000536709 1020 ntTSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
USP39Q53GS9 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC7.13□□□□□ -1.27
USP39Q53GS9 AC087888.1-201ENST00000550884 1254 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC7.13□□□□□ -1.27
USP39Q53GS9 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC7.13□□□□□ -1.27
USP39Q53GS9 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC7.13□□□□□ -1.27
USP39Q53GS9 HNRNPA1P74-201ENST00000560782 835 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 OR4C49P-201ENST00000563891 900 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 MIR3157-201ENST00000578688 85 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 MIR212-201ENST00000586026 110 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC7.13□□□□□ -1.27
USP39Q53GS9 BNIP3P31-201ENST00000604515 566 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 AL161912.3-201ENST00000605404 628 ntBASIC7.13□□□□□ -1.27
USP39Q53GS9 AL391597.1-201ENST00000618707 694 ntBASIC7.13□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms