Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC7□□□□□ -1.29
PTPN9P43378 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC7□□□□□ -1.29
PTPN9P43378 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC7□□□□□ -1.29
PTPN9P43378 AC011921.2-201ENST00000589465 152 ntBASIC7□□□□□ -1.29
PTPN9P43378 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC7□□□□□ -1.29
PTPN9P43378 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC7□□□□□ -1.29
PTPN9P43378 AC005858.3-201ENST00000624756 589 ntBASIC7□□□□□ -1.29
PTPN9P43378 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC7□□□□□ -1.29
PTPN9P43378 AC022507.1-201ENST00000548349 1505 ntBASIC7□□□□□ -1.29
PTPN9P43378 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC7□□□□□ -1.29
PTPN9P43378 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC7□□□□□ -1.29
PTPN9P43378 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC7□□□□□ -1.29
PTPN9P43378 MTCO1P25-201ENST00000414449 1799 ntBASIC7□□□□□ -1.29
PTPN9P43378 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC7□□□□□ -1.29
PTPN9P43378 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC7□□□□□ -1.29
PTPN9P43378 AC007012.2-201ENST00000623206 1676 ntBASIC7□□□□□ -1.29
PTPN9P43378 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
PTPN9P43378 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC6.99□□□□□ -1.29
PTPN9P43378 AC122713.2-201ENST00000624942 3335 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 AC007342.9-201ENST00000623877 1385 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 OR2M1P-201ENST00000318104 951 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 RN7SKP77-201ENST00000363261 353 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 AL590635.1-201ENST00000406314 586 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.99□□□□□ -1.29
PTPN9P43378 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.99□□□□□ -1.29
PTPN9P43378 HCG20-208ENST00000439406 1202 ntTSL 2 BASIC6.99□□□□□ -1.29
PTPN9P43378 SNRPBP1-201ENST00000443634 282 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 RN7SL372P-201ENST00000461982 298 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 SCARNA11.1-201ENST00000516918 132 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC6.99□□□□□ -1.29
PTPN9P43378 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC6.99□□□□□ -1.29
PTPN9P43378 AC026616.1-201ENST00000523157 525 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 AP000662.1-201ENST00000530952 487 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.99□□□□□ -1.29
PTPN9P43378 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.99□□□□□ -1.29
PTPN9P43378 AL109628.1-201ENST00000556877 366 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.99□□□□□ -1.29
PTPN9P43378 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 ANP32BP1-202ENST00000568553 737 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC6.99□□□□□ -1.29
PTPN9P43378 AC074141.1-201ENST00000588129 2995 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 RPS4XP21-201ENST00000603814 750 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
PTPN9P43378 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.99□□□□□ -1.29
PTPN9P43378 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
PTPN9P43378 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
PTPN9P43378 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 AL512353.3-201ENST00000417517 1326 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 KYNUP2-201ENST00000582280 1329 ntBASIC6.99□□□□□ -1.29
PTPN9P43378 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PTPN9P43378 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.98□□□□□ -1.29
PTPN9P43378 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.98□□□□□ -1.29
PTPN9P43378 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC6.98□□□□□ -1.29
PTPN9P43378 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
PTPN9P43378 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.98□□□□□ -1.29
PTPN9P43378 AC009220.2-201ENST00000489759 1751 ntBASIC6.98□□□□□ -1.29
PTPN9P43378 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
PTPN9P43378 CASC19-243ENST00000641588 1546 ntBASIC6.98□□□□□ -1.29
PTPN9P43378 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
PTPN9P43378 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
PTPN9P43378 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
PTPN9P43378 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
PTPN9P43378 MRPL47-201ENST00000259038 1126 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms