Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC092266.1-201ENST00000610958 165 ntBASIC6.33□□□□□ -1.4
COL5A1P20908 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A1P20908 AC005277.2-201ENST00000617898 390 ntBASIC6.33□□□□□ -1.4
COL5A1P20908 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.33□□□□□ -1.4
COL5A1P20908 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A1P20908 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
COL5A1P20908 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.33□□□□□ -1.4
COL5A1P20908 STK32B-207ENST00000512636 3272 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A1P20908 C14orf37-201ENST00000267485 6495 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A1P20908 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC6.33□□□□□ -1.4
COL5A1P20908 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A1P20908 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A1P20908 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
COL5A1P20908 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A1P20908 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A1P20908 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.33□□□□□ -1.4
COL5A1P20908 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A1P20908 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC6.33□□□□□ -1.4
COL5A1P20908 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
COL5A1P20908 AC020978.8-201ENST00000571975 3022 ntBASIC6.33□□□□□ -1.4
COL5A1P20908 HEATR6-201ENST00000184956 3932 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A1P20908 SNX18P24-201ENST00000505249 671 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC008429.2-201ENST00000523057 864 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC6.32□□□□□ -1.4
COL5A1P20908 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC106785.4-201ENST00000569492 412 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC091768.1-201ENST00000609258 930 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 FAM27E2-201ENST00000619668 403 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC073488.6-201ENST00000632293 754 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 AL138756.1-201ENST00000563434 4488 ntTSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A1P20908 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC6.32□□□□□ -1.4
COL5A1P20908 HSPD1P4-201ENST00000547203 1702 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.32□□□□□ -1.4
COL5A1P20908 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
COL5A1P20908 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A1P20908 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A1P20908 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 CDY10P-201ENST00000452415 1567 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 OR51M1-203ENST00000642046 4092 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
COL5A1P20908 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A1P20908 AC094019.1-201ENST00000434678 472 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 TVP23CP1-201ENST00000450317 639 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC060775.1-201ENST00000518241 520 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 OR4A13P-201ENST00000529316 942 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 AC090115.2-201ENST00000548060 883 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC139493.1-201ENST00000604368 397 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC6.32□□□□□ -1.4
COL5A1P20908 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
COL5A1P20908 AC079776.5-201ENST00000641920 211 ntBASIC6.32□□□□□ -1.4
COL5A1P20908 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 SPATA31C2-201ENST00000324915 3777 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL5A1P20908 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC6.31□□□□□ -1.4
COL5A1P20908 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.31□□□□□ -1.4
COL5A1P20908 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 AC110373.1-201ENST00000505994 3505 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL5A1P20908 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A1P20908 VN2R1P-201ENST00000449668 1743 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL5A1P20908 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A1P20908 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A1P20908 NCOA4P3-201ENST00000513203 1877 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms