Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
COL5A3P25940 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC8.1□□□□□ -1.11
COL5A3P25940 ZNF793-208ENST00000588578 4549 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC8.09□□□□□ -1.11
COL5A3P25940 ST6GAL2-201ENST00000361686 6857 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 TACC2-226ENST00000513429 4114 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 AL354890.1-201ENST00000413730 346 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 BX284632.2-201ENST00000421091 399 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 IGLV3-4-201ENST00000432300 244 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 GAPDHP75-201ENST00000433910 943 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AL512605.1-202ENST00000441919 381 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AL359955.2-201ENST00000445380 353 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 AC023141.9-201ENST00000458734 412 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
COL5A3P25940 PPIAP19-201ENST00000486414 492 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 CETN3-206ENST00000522864 738 ntTSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 AC007956.1-201ENST00000555623 542 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC8.09□□□□□ -1.11
COL5A3P25940 RNA5SP440-201ENST00000612665 119 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AC012653.2-201ENST00000621880 420 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AC129778.1-202ENST00000623812 261 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AL591379.1-207ENST00000635982 261 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AMYH02020865.1-205ENST00000636189 261 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
COL5A3P25940 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
COL5A3P25940 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC8.09□□□□□ -1.11
COL5A3P25940 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 KANK1-205ENST00000382297 5051 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 CCDC85C-201ENST00000380243 16393 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
COL5A3P25940 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC8.09□□□□□ -1.11
COL5A3P25940 SP4-201ENST00000222584 6126 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC8.09□□□□□ -1.11
COL5A3P25940 HUWE1-202ENST00000262854 14739 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL5A3P25940 AC016769.2-201ENST00000414815 475 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AL157884.1-201ENST00000424561 454 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 PCBP2P1-201ENST00000437262 977 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 RN7SL326P-201ENST00000477493 296 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC8.09□□□□□ -1.11
COL5A3P25940 TPRX1P1-201ENST00000557620 319 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 AC010547.6-201ENST00000571789 193 ntBASIC8.09□□□□□ -1.11
COL5A3P25940 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC8.09□□□□□ -1.11
COL5A3P25940 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC8.09□□□□□ -1.11
COL5A3P25940 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC8.09□□□□□ -1.11
COL5A3P25940 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC8.09□□□□□ -1.11
COL5A3P25940 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC8.09□□□□□ -1.11
COL5A3P25940 EFNA5-201ENST00000333274 5335 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.12
COL5A3P25940 OLFML1-201ENST00000329293 2792 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.12
COL5A3P25940 MTOR-201ENST00000361445 8677 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.12
COL5A3P25940 BPTF-203ENST00000335221 2627 ntTSL 5 BASIC8.08□□□□□ -1.12
COL5A3P25940 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 MYEF2-202ENST00000324324 10360 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
COL5A3P25940 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 GLRA2-201ENST00000218075 3216 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 ITGB6-201ENST00000283249 4675 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 RNFT1P3-201ENST00000340898 1052 ntBASIC8.08□□□□□ -1.12
COL5A3P25940 RNA5SP242-201ENST00000364171 118 ntBASIC8.08□□□□□ -1.12
COL5A3P25940 AC096537.2-201ENST00000413707 714 ntBASIC8.08□□□□□ -1.12
COL5A3P25940 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC8.08□□□□□ -1.12
COL5A3P25940 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC8.08□□□□□ -1.12
COL5A3P25940 NDUFS5P5-201ENST00000437256 321 ntBASIC8.08□□□□□ -1.12
COL5A3P25940 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC8.08□□□□□ -1.12
COL5A3P25940 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC8.08□□□□□ -1.12
COL5A3P25940 AC022826.1-201ENST00000519383 805 ntBASIC8.08□□□□□ -1.12
COL5A3P25940 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
COL5A3P25940 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 MIR6809-201ENST00000612189 116 ntBASIC8.08□□□□□ -1.12
COL5A3P25940 MIR7159-201ENST00000620587 66 ntBASIC8.08□□□□□ -1.12
COL5A3P25940 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
COL5A3P25940 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
COL5A3P25940 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
COL5A3P25940 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 RAD54L2-201ENST00000409535 9776 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
COL5A3P25940 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC8.08□□□□□ -1.12
COL5A3P25940 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL5A3P25940 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 NBAS-201ENST00000281513 7281 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL5A3P25940 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 NCKAP5-205ENST00000409261 7594 ntAPPRIS P4 TSL 5 BASIC8.07□□□□□ -1.12
COL5A3P25940 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC8.07□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms