Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 MAK-202ENST00000354489 3941 ntTSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 AL021877.2-201ENST00000624442 10684 ntBASIC6.93□□□□□ -1.3
HDDC3Q8N4P3 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 NF1P8-201ENST00000415351 1461 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ARHGAP42P4-201ENST00000549782 2934 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AL512329.1-201ENST00000404600 1592 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 GSTA6P-201ENST00000424144 582 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 KCTD9P1-201ENST00000430462 1167 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AL121578.2-201ENST00000448797 447 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 OR7E22P-201ENST00000478335 1035 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 RPS27P20-201ENST00000492051 246 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 OR9G2P-201ENST00000533326 880 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 CCL2-202ENST00000580907 736 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 AC008736.1-201ENST00000592431 568 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 DIMT1P1-201ENST00000603970 763 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 CASC19-232ENST00000641480 1244 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 CASC19-274ENST00000642018 970 ntBASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
HDDC3Q8N4P3 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 SPATA31C2-201ENST00000324915 3777 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 CDY7P-201ENST00000429883 1604 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 ASNSP6-201ENST00000592770 1618 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 RNU6-673P-201ENST00000365084 104 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 RN7SKP47-201ENST00000365347 328 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 RGS5-202ENST00000367903 934 ntTSL 3 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 RN7SKP86-201ENST00000410454 332 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 NPM1P36-201ENST00000415681 835 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AL389925.1-201ENST00000432257 728 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 CCNJP2-201ENST00000457810 1163 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 RPS3AP49-201ENST00000472161 790 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AC055733.3-201ENST00000505214 523 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 SSX8-201ENST00000506270 579 ntBASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC6.91□□□□□ -1.3
HDDC3Q8N4P3 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms