Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 REXO1L12P-201ENST00000622156 912 ntBASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDHGA3Q9Y5H0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 AC006557.6-201ENST00000623071 864 ntBASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDHGA3Q9Y5H0 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDHGA3Q9Y5H0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 AL049637.2-201ENST00000641778 930 ntBASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
PCDHGA3Q9Y5H0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
PCDHGA3Q9Y5H0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.27■□□□□ 0.67
PCDHGA3Q9Y5H0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
PCDHGA3Q9Y5H0 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA3Q9Y5H0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms