Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
NOTCH3Q9UM47 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.33■□□□□ 0.05
NOTCH3Q9UM47 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.33■□□□□ 0.05
NOTCH3Q9UM47 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
NOTCH3Q9UM47 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NOTCH3Q9UM47 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NOTCH3Q9UM47 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 WWC2-AS2-201ENST00000578387 2183 ntBASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 KRT18P35-201ENST00000510488 1269 ntBASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 AC145285.6-201ENST00000604632 637 ntBASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 AL137060.1-201ENST00000618151 2648 ntBASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NOTCH3Q9UM47 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 KRT18P57-201ENST00000443599 1254 ntBASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 AF186192.3-201ENST00000583427 947 ntBASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 AC006557.6-201ENST00000623071 864 ntBASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NOTCH3Q9UM47 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 AC113347.1-201ENST00000413321 391 ntBASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 P4HB-223ENST00000576390 439 ntTSL 4 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 NTF6B-201ENST00000591913 560 ntBASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC15.31■□□□□ 0.04
NOTCH3Q9UM47 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 KRT18P22-201ENST00000402024 1347 ntBASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NOTCH3Q9UM47 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms