Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.29■■□□□ 1
PAAF1Q9BRP4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PAAF1Q9BRP4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
PAAF1Q9BRP4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
PAAF1Q9BRP4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.29■■□□□ 1
PAAF1Q9BRP4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
PAAF1Q9BRP4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.28■■□□□ 1
PAAF1Q9BRP4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 AC116351.2-201ENST00000606540 1585 ntBASIC21.28■■□□□ 1
PAAF1Q9BRP4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.28■■□□□ 1
PAAF1Q9BRP4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.28■■□□□ 1
PAAF1Q9BRP4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
PAAF1Q9BRP4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PAAF1Q9BRP4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
PAAF1Q9BRP4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.27■■□□□ 1
PAAF1Q9BRP4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PAAF1Q9BRP4 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PAAF1Q9BRP4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.27■■□□□ 1
PAAF1Q9BRP4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
PAAF1Q9BRP4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 AL353807.1-201ENST00000427475 662 ntBASIC21.27■■□□□ 1
PAAF1Q9BRP4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.27■■□□□ 1
PAAF1Q9BRP4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.27■■□□□ 1
PAAF1Q9BRP4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.27■■□□□ 1
PAAF1Q9BRP4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PAAF1Q9BRP4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
PAAF1Q9BRP4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.27■□□□□ 0.99
PAAF1Q9BRP4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 AC018553.1-201ENST00000616682 1458 ntBASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 AC087499.1-201ENST00000418141 1075 ntBASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 AC073195.1-201ENST00000607241 877 ntBASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 KRT16P6-202ENST00000425692 1426 ntBASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 TFP1-202ENST00000475455 1573 ntBASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PAAF1Q9BRP4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 AC073314.1-201ENST00000568729 2216 ntBASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PAAF1Q9BRP4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PAAF1Q9BRP4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms