Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
NR1H4Q96RI1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.72■□□□□ 0.59
NR1H4Q96RI1 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 AC009299.2-201ENST00000482477 511 ntBASIC18.71■□□□□ 0.59
NR1H4Q96RI1 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
NR1H4Q96RI1 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.58
NR1H4Q96RI1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 AC020763.4-201ENST00000623414 4170 ntBASIC18.7■□□□□ 0.58
NR1H4Q96RI1 AC090164.3-201ENST00000610780 2143 ntBASIC18.7■□□□□ 0.58
NR1H4Q96RI1 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 AC010141.3-201ENST00000456659 717 ntBASIC18.7■□□□□ 0.58
NR1H4Q96RI1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
NR1H4Q96RI1 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 PRORSD1P-202ENST00000563365 2154 ntBASIC18.69■□□□□ 0.58
NR1H4Q96RI1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 AL354751.1-201ENST00000412768 1863 ntBASIC18.69■□□□□ 0.58
NR1H4Q96RI1 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NR1H4Q96RI1 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 BICD1-207ENST00000551848 1962 ntBASIC18.68■□□□□ 0.58
NR1H4Q96RI1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 AL451085.2-201ENST00000605085 799 ntBASIC18.68■□□□□ 0.58
NR1H4Q96RI1 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
NR1H4Q96RI1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms