Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRCH3Q96II8 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRCH3Q96II8 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.6■■□□□ 1.05
LRCH3Q96II8 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LRCH3Q96II8 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.59■■□□□ 1.05
LRCH3Q96II8 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.59■■□□□ 1.05
LRCH3Q96II8 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.59■■□□□ 1.05
LRCH3Q96II8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRCH3Q96II8 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRCH3Q96II8 DGCR10-201ENST00000609839 495 ntBASIC21.59■■□□□ 1.05
LRCH3Q96II8 AC139530.3-201ENST00000620344 690 ntBASIC21.59■■□□□ 1.05
LRCH3Q96II8 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.59■■□□□ 1.05
LRCH3Q96II8 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRCH3Q96II8 AC139530.1-201ENST00000575312 1977 ntBASIC21.59■■□□□ 1.05
LRCH3Q96II8 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRCH3Q96II8 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRCH3Q96II8 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRCH3Q96II8 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LRCH3Q96II8 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LRCH3Q96II8 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LRCH3Q96II8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LRCH3Q96II8 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 AC004870.1-201ENST00000315132 882 ntBASIC21.58■■□□□ 1.05
LRCH3Q96II8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LRCH3Q96II8 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 B3GAT3P1-201ENST00000471720 806 ntBASIC21.58■■□□□ 1.05
LRCH3Q96II8 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LRCH3Q96II8 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LRCH3Q96II8 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.58■■□□□ 1.05
LRCH3Q96II8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
LRCH3Q96II8 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LRCH3Q96II8 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.58■■□□□ 1.04
LRCH3Q96II8 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LRCH3Q96II8 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
LRCH3Q96II8 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
LRCH3Q96II8 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LRCH3Q96II8 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LRCH3Q96II8 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.57■■□□□ 1.04
LRCH3Q96II8 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.57■■□□□ 1.04
LRCH3Q96II8 HOMER2P1-201ENST00000455653 964 ntBASIC21.57■■□□□ 1.04
LRCH3Q96II8 AC011506.1-201ENST00000474329 610 ntBASIC21.57■■□□□ 1.04
LRCH3Q96II8 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
LRCH3Q96II8 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.57■■□□□ 1.04
LRCH3Q96II8 AC141257.4-201ENST00000634557 245 ntBASIC21.57■■□□□ 1.04
LRCH3Q96II8 AC136944.6-201ENST00000634818 245 ntBASIC21.57■■□□□ 1.04
LRCH3Q96II8 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LRCH3Q96II8 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LRCH3Q96II8 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LRCH3Q96II8 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LRCH3Q96II8 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
LRCH3Q96II8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.56■■□□□ 1.04
LRCH3Q96II8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 VENTXP5-201ENST00000523979 775 ntBASIC21.56■■□□□ 1.04
LRCH3Q96II8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.56■■□□□ 1.04
LRCH3Q96II8 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LRCH3Q96II8 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.55■■□□□ 1.04
LRCH3Q96II8 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms