Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 GGT1-206ENST00000404223 952 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 AC010331.1-201ENST00000611423 582 ntBASIC6.12□□□□□ -1.43
SYNE1Q8NF91 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 AC006557.6-201ENST00000623071 864 ntBASIC6.12□□□□□ -1.43
SYNE1Q8NF91 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 KRASP1-201ENST00000407852 552 ntBASIC6.12□□□□□ -1.43
SYNE1Q8NF91 AC005829.2-201ENST00000571422 1056 ntBASIC6.12□□□□□ -1.43
SYNE1Q8NF91 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 AC090340.1-201ENST00000620778 4980 ntBASIC6.11□□□□□ -1.43
SYNE1Q8NF91 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 MCRIP2P1-201ENST00000394346 511 ntBASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 AC113410.3-201ENST00000623366 203 ntBASIC6.11□□□□□ -1.43
SYNE1Q8NF91 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 GRAP-204ENST00000573099 846 ntTSL 3 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 REXO1L12P-201ENST00000622156 912 ntBASIC6.11□□□□□ -1.43
SYNE1Q8NF91 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 AC112907.3-201ENST00000577781 2400 ntBASIC6.11□□□□□ -1.43
SYNE1Q8NF91 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SYNE1Q8NF91 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms