Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
VPS53Q5VIR6 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
VPS53Q5VIR6 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 AC005829.2-201ENST00000571422 1056 ntBASIC23.99■■□□□ 1.43
VPS53Q5VIR6 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 KRT8P17-201ENST00000453110 1448 ntBASIC23.99■■□□□ 1.43
VPS53Q5VIR6 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 AFG3L1P-217ENST00000557444 2447 ntBASIC23.99■■□□□ 1.43
VPS53Q5VIR6 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS53Q5VIR6 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 HES2-206ENST00000489730 730 ntTSL 2 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 UNC93B5-201ENST00000530315 699 ntBASIC23.98■■□□□ 1.43
VPS53Q5VIR6 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.98■■□□□ 1.43
VPS53Q5VIR6 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS53Q5VIR6 AC008403.3-201ENST00000598924 454 ntBASIC23.97■■□□□ 1.43
VPS53Q5VIR6 AL031963.3-201ENST00000606441 850 ntBASIC23.97■■□□□ 1.43
VPS53Q5VIR6 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS53Q5VIR6 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.43
VPS53Q5VIR6 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
VPS53Q5VIR6 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
VPS53Q5VIR6 BX119927.1-201ENST00000636596 1552 ntBASIC23.95■■□□□ 1.43
VPS53Q5VIR6 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
VPS53Q5VIR6 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 GGT1-206ENST00000404223 952 ntTSL 2 BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.95■■□□□ 1.42
VPS53Q5VIR6 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC23.95■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms