Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 UNC93B2-201ENST00000285383 730 ntBASIC17.14■□□□□ 0.33
ABCA4P78363 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.14■□□□□ 0.33
ABCA4P78363 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.14■□□□□ 0.33
ABCA4P78363 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.14■□□□□ 0.33
ABCA4P78363 AC005363.2-201ENST00000618631 242 ntBASIC17.14■□□□□ 0.33
ABCA4P78363 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
ABCA4P78363 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ABCA4P78363 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.13■□□□□ 0.33
ABCA4P78363 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ABCA4P78363 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
ABCA4P78363 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.13■□□□□ 0.33
ABCA4P78363 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.13■□□□□ 0.33
ABCA4P78363 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
ABCA4P78363 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.13■□□□□ 0.33
ABCA4P78363 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.13■□□□□ 0.33
ABCA4P78363 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.13■□□□□ 0.33
ABCA4P78363 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.13■□□□□ 0.33
ABCA4P78363 AP000525.1-201ENST00000608286 694 ntBASIC17.13■□□□□ 0.33
ABCA4P78363 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.13■□□□□ 0.33
ABCA4P78363 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.13■□□□□ 0.33
ABCA4P78363 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.13■□□□□ 0.33
ABCA4P78363 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ABCA4P78363 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ABCA4P78363 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ABCA4P78363 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 AL445675.2-201ENST00000620291 557 ntBASIC17.12■□□□□ 0.33
ABCA4P78363 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
ABCA4P78363 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.12■□□□□ 0.33
ABCA4P78363 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ABCA4P78363 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
ABCA4P78363 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
ABCA4P78363 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.12■□□□□ 0.33
ABCA4P78363 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.12■□□□□ 0.33
ABCA4P78363 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.12■□□□□ 0.33
ABCA4P78363 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
ABCA4P78363 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.12■□□□□ 0.33
ABCA4P78363 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.12■□□□□ 0.33
ABCA4P78363 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 KRT16P1-201ENST00000399124 1418 ntBASIC17.11■□□□□ 0.33
ABCA4P78363 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.11■□□□□ 0.33
ABCA4P78363 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
ABCA4P78363 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ABCA4P78363 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.11■□□□□ 0.33
ABCA4P78363 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.11■□□□□ 0.33
ABCA4P78363 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.11■□□□□ 0.33
ABCA4P78363 AC005229.4-201ENST00000610085 2198 ntBASIC17.11■□□□□ 0.33
ABCA4P78363 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ABCA4P78363 AC026310.3-201ENST00000625186 2373 ntBASIC17.11■□□□□ 0.33
ABCA4P78363 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ABCA4P78363 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ABCA4P78363 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA4P78363 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA4P78363 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.1■□□□□ 0.33
ABCA4P78363 SLC25A3P1-201ENST00000443844 931 ntBASIC17.1■□□□□ 0.33
ABCA4P78363 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.1■□□□□ 0.33
ABCA4P78363 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA4P78363 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA4P78363 PLK5-205ENST00000642079 1969 ntBASIC17.1■□□□□ 0.33
ABCA4P78363 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.1■□□□□ 0.33
ABCA4P78363 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA4P78363 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA4P78363 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
ABCA4P78363 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.1■□□□□ 0.33
ABCA4P78363 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA4P78363 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ABCA4P78363 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms