Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFX3P48380 RNF165-205ENST00000588679 2904 ntBASIC18.66■□□□□ 0.58
RFX3P48380 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFX3P48380 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.65■□□□□ 0.58
RFX3P48380 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX3P48380 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
RFX3P48380 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX3P48380 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX3P48380 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFX3P48380 MIPEPP3-201ENST00000412105 444 ntBASIC18.65■□□□□ 0.58
RFX3P48380 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.65■□□□□ 0.58
RFX3P48380 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.65■□□□□ 0.58
RFX3P48380 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.65■□□□□ 0.58
RFX3P48380 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RFX3P48380 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.65■□□□□ 0.58
RFX3P48380 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
RFX3P48380 AL109923.1-201ENST00000618799 583 ntBASIC18.65■□□□□ 0.58
RFX3P48380 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RFX3P48380 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX3P48380 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.65■□□□□ 0.58
RFX3P48380 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RFX3P48380 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX3P48380 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX3P48380 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX3P48380 AC099778.1-201ENST00000568593 1911 ntBASIC18.64■□□□□ 0.58
RFX3P48380 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
RFX3P48380 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
RFX3P48380 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.64■□□□□ 0.58
RFX3P48380 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
RFX3P48380 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX3P48380 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RFX3P48380 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX3P48380 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.64■□□□□ 0.57
RFX3P48380 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX3P48380 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RFX3P48380 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.64■□□□□ 0.57
RFX3P48380 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.64■□□□□ 0.57
RFX3P48380 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.64■□□□□ 0.57
RFX3P48380 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.64■□□□□ 0.57
RFX3P48380 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RFX3P48380 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.64■□□□□ 0.57
RFX3P48380 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.64■□□□□ 0.57
RFX3P48380 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.64■□□□□ 0.57
RFX3P48380 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.64■□□□□ 0.57
RFX3P48380 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.64■□□□□ 0.57
RFX3P48380 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.64■□□□□ 0.57
RFX3P48380 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX3P48380 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX3P48380 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.64■□□□□ 0.57
RFX3P48380 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.64■□□□□ 0.57
RFX3P48380 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.64■□□□□ 0.57
RFX3P48380 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RFX3P48380 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX3P48380 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX3P48380 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.63■□□□□ 0.57
RFX3P48380 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX3P48380 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX3P48380 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.63■□□□□ 0.57
RFX3P48380 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX3P48380 TSPY6P-201ENST00000448518 926 ntBASIC18.63■□□□□ 0.57
RFX3P48380 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.63■□□□□ 0.57
RFX3P48380 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.63■□□□□ 0.57
RFX3P48380 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX3P48380 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RFX3P48380 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.63■□□□□ 0.57
RFX3P48380 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX3P48380 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX3P48380 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.63■□□□□ 0.57
RFX3P48380 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RFX3P48380 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RFX3P48380 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.62■□□□□ 0.57
RFX3P48380 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RFX3P48380 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 AL162377.1-201ENST00000618844 1793 ntBASIC18.62■□□□□ 0.57
RFX3P48380 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFX3P48380 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.62■□□□□ 0.57
RFX3P48380 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
RFX3P48380 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.61■□□□□ 0.57
RFX3P48380 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFX3P48380 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms