Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
HOXA9P31269 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA9P31269 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXA9P31269 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXA9P31269 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA9P31269 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXA9P31269 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXA9P31269 LINC01568-207ENST00000641790 1380 ntBASIC20.79■□□□□ 0.92
HOXA9P31269 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA9P31269 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA9P31269 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.79■□□□□ 0.92
HOXA9P31269 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXA9P31269 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HOXA9P31269 KRT18P22-201ENST00000402024 1347 ntBASIC20.78■□□□□ 0.92
HOXA9P31269 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.78■□□□□ 0.92
HOXA9P31269 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXA9P31269 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXA9P31269 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXA9P31269 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
HOXA9P31269 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXA9P31269 FSCN1P1-201ENST00000568912 1481 ntBASIC20.78■□□□□ 0.92
HOXA9P31269 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXA9P31269 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXA9P31269 AC113347.1-201ENST00000413321 391 ntBASIC20.78■□□□□ 0.92
HOXA9P31269 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.78■□□□□ 0.92
HOXA9P31269 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXA9P31269 YBX1P10-201ENST00000444752 975 ntBASIC20.78■□□□□ 0.92
HOXA9P31269 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXA9P31269 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXA9P31269 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXA9P31269 KRT16P6-202ENST00000425692 1426 ntBASIC20.78■□□□□ 0.92
HOXA9P31269 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXA9P31269 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXA9P31269 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXA9P31269 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.77■□□□□ 0.92
HOXA9P31269 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
HOXA9P31269 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.77■□□□□ 0.92
HOXA9P31269 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.77■□□□□ 0.92
HOXA9P31269 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 AL445228.2-201ENST00000605589 952 ntBASIC20.77■□□□□ 0.92
HOXA9P31269 AC010947.1-201ENST00000623454 693 ntBASIC20.77■□□□□ 0.92
HOXA9P31269 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
HOXA9P31269 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.77■□□□□ 0.92
HOXA9P31269 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXA9P31269 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXA9P31269 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 TFP1-202ENST00000475455 1573 ntBASIC20.76■□□□□ 0.91
HOXA9P31269 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
HOXA9P31269 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXA9P31269 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXA9P31269 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HOXA9P31269 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HOXA9P31269 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HOXA9P31269 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 AC005521.1-201ENST00000393351 872 ntBASIC20.76■□□□□ 0.91
HOXA9P31269 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXA9P31269 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HOXA9P31269 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXA9P31269 DGCR10-201ENST00000609839 495 ntBASIC20.76■□□□□ 0.91
HOXA9P31269 AL590326.2-201ENST00000625139 305 ntBASIC20.76■□□□□ 0.91
HOXA9P31269 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.76■□□□□ 0.91
HOXA9P31269 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXA9P31269 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXA9P31269 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HOXA9P31269 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXA9P31269 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXA9P31269 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HOXA9P31269 CYP2D8P-201ENST00000433633 1490 ntBASIC20.75■□□□□ 0.91
HOXA9P31269 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HOXA9P31269 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXA9P31269 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXA9P31269 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXA9P31269 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXA9P31269 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.75■□□□□ 0.91
HOXA9P31269 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXA9P31269 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXA9P31269 AL390955.1-201ENST00000428694 934 ntBASIC20.75■□□□□ 0.91
HOXA9P31269 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXA9P31269 KRT18P16-201ENST00000510337 1294 ntBASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms