Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SIX3O95343 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.42■□□□□ 0.7
SIX3O95343 AC092437.1-201ENST00000624794 1048 ntBASIC19.42■□□□□ 0.7
SIX3O95343 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
SIX3O95343 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.42■□□□□ 0.7
SIX3O95343 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX3O95343 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 AC093484.2-201ENST00000580996 2166 ntBASIC19.42■□□□□ 0.7
SIX3O95343 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.41■□□□□ 0.7
SIX3O95343 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SIX3O95343 AC009237.14-201ENST00000609975 1594 ntBASIC19.41■□□□□ 0.7
SIX3O95343 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
SIX3O95343 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
SIX3O95343 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.41■□□□□ 0.7
SIX3O95343 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.41■□□□□ 0.7
SIX3O95343 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SIX3O95343 AC005181.1-201ENST00000604782 1256 ntBASIC19.41■□□□□ 0.7
SIX3O95343 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX3O95343 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SIX3O95343 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SIX3O95343 KRT16P6-202ENST00000425692 1426 ntBASIC19.41■□□□□ 0.7
SIX3O95343 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX3O95343 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX3O95343 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX3O95343 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX3O95343 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.4■□□□□ 0.7
SIX3O95343 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.4■□□□□ 0.7
SIX3O95343 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.4■□□□□ 0.7
SIX3O95343 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SIX3O95343 IKBKGP1-201ENST00000612193 1073 ntBASIC19.4■□□□□ 0.7
SIX3O95343 AL589743.5-201ENST00000616611 1050 ntBASIC19.4■□□□□ 0.7
SIX3O95343 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX3O95343 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.4■□□□□ 0.7
SIX3O95343 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX3O95343 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SIX3O95343 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SIX3O95343 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SIX3O95343 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SIX3O95343 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SIX3O95343 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX3O95343 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
SIX3O95343 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX3O95343 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 C2orf69P4-201ENST00000565394 541 ntBASIC19.39■□□□□ 0.69
SIX3O95343 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX3O95343 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX3O95343 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX3O95343 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX3O95343 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms