Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
NPHP4O75161 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC28.24■■■□□ 2.11
NPHP4O75161 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP4O75161 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC28.23■■■□□ 2.11
NPHP4O75161 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC28.23■■■□□ 2.11
NPHP4O75161 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP4O75161 FDX1P1-201ENST00000449115 551 ntBASIC28.23■■■□□ 2.11
NPHP4O75161 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC28.23■■■□□ 2.11
NPHP4O75161 VENTXP5-201ENST00000523979 775 ntBASIC28.23■■■□□ 2.11
NPHP4O75161 AC083849.1-201ENST00000615227 514 ntBASIC28.23■■■□□ 2.11
NPHP4O75161 STK25-204ENST00000405585 1643 ntTSL 2 BASIC28.23■■■□□ 2.11
NPHP4O75161 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP4O75161 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP4O75161 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP4O75161 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP4O75161 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC28.22■■■□□ 2.11
NPHP4O75161 ME2-206ENST00000638410 2289 ntTSL 5 BASIC28.22■■■□□ 2.11
NPHP4O75161 ME2-210ENST00000639255 2262 ntTSL 5 BASIC28.22■■■□□ 2.11
NPHP4O75161 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP4O75161 GXYLT1P6-201ENST00000456472 1187 ntBASIC28.22■■■□□ 2.11
NPHP4O75161 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP4O75161 AL136038.3-201ENST00000561909 1096 ntBASIC28.22■■■□□ 2.11
NPHP4O75161 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
NPHP4O75161 AL023803.3-201ENST00000615559 522 ntBASIC28.22■■■□□ 2.11
NPHP4O75161 AL031432.5-201ENST00000641059 760 ntBASIC28.22■■■□□ 2.11
NPHP4O75161 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
NPHP4O75161 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP4O75161 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC28.22■■■□□ 2.11
NPHP4O75161 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP4O75161 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP4O75161 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP4O75161 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC28.21■■■□□ 2.11
NPHP4O75161 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC28.21■■■□□ 2.11
NPHP4O75161 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC28.21■■■□□ 2.11
NPHP4O75161 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP4O75161 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC28.21■■■□□ 2.11
NPHP4O75161 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC28.21■■■□□ 2.11
NPHP4O75161 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC28.21■■■□□ 2.11
NPHP4O75161 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
NPHP4O75161 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP4O75161 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP4O75161 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
NPHP4O75161 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC28.21■■■□□ 2.11
NPHP4O75161 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP4O75161 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
NPHP4O75161 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.11
NPHP4O75161 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC28.2■■■□□ 2.11
NPHP4O75161 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
NPHP4O75161 AC004951.3-201ENST00000418645 1148 ntBASIC28.2■■■□□ 2.11
NPHP4O75161 ATP5G2P1-201ENST00000433580 426 ntBASIC28.2■■■□□ 2.11
NPHP4O75161 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.11
NPHP4O75161 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC28.2■■■□□ 2.11
NPHP4O75161 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC28.2■■■□□ 2.11
NPHP4O75161 KLK8-205ENST00000593490 267 ntTSL 3 BASIC28.2■■■□□ 2.11
NPHP4O75161 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC28.2■■■□□ 2.11
NPHP4O75161 PALM-207ENST00000590161 2137 ntTSL 4 BASIC28.2■■■□□ 2.1
NPHP4O75161 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC28.2■■■□□ 2.1
NPHP4O75161 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC28.2■■■□□ 2.1
NPHP4O75161 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC28.2■■■□□ 2.1
NPHP4O75161 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP4O75161 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP4O75161 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC28.19■■■□□ 2.1
NPHP4O75161 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC28.19■■■□□ 2.1
NPHP4O75161 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC28.19■■■□□ 2.1
NPHP4O75161 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP4O75161 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP4O75161 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP4O75161 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC28.18■■■□□ 2.1
NPHP4O75161 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
NPHP4O75161 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
NPHP4O75161 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC28.18■■■□□ 2.1
NPHP4O75161 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC28.18■■■□□ 2.1
NPHP4O75161 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
NPHP4O75161 PTPA-216ENST00000432651 857 ntTSL 2 BASIC28.18■■■□□ 2.1
NPHP4O75161 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
NPHP4O75161 PRSS44-201ENST00000515154 1146 ntBASIC28.18■■■□□ 2.1
NPHP4O75161 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP4O75161 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP4O75161 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP4O75161 FXN-203ENST00000396366 922 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP4O75161 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP4O75161 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP4O75161 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC28.17■■■□□ 2.1
NPHP4O75161 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP4O75161 ETFA-216ENST00000560726 942 ntTSL 3 BASIC28.17■■■□□ 2.1
NPHP4O75161 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC28.17■■■□□ 2.1
NPHP4O75161 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP4O75161 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms