Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.6■□□□□ 0.73
SNX3O60493 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.6■□□□□ 0.73
SNX3O60493 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.6■□□□□ 0.73
SNX3O60493 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.6■□□□□ 0.73
SNX3O60493 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SNX3O60493 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.59■□□□□ 0.73
SNX3O60493 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SNX3O60493 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.59■□□□□ 0.73
SNX3O60493 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.59■□□□□ 0.73
SNX3O60493 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SNX3O60493 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SNX3O60493 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SNX3O60493 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.59■□□□□ 0.73
SNX3O60493 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.59■□□□□ 0.73
SNX3O60493 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.59■□□□□ 0.73
SNX3O60493 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 AC020916.1-201ENST00000587762 1774 ntBASIC19.59■□□□□ 0.73
SNX3O60493 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SNX3O60493 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SNX3O60493 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
SNX3O60493 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.58■□□□□ 0.73
SNX3O60493 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SNX3O60493 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.58■□□□□ 0.73
SNX3O60493 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SNX3O60493 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.58■□□□□ 0.73
SNX3O60493 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.58■□□□□ 0.73
SNX3O60493 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SNX3O60493 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.58■□□□□ 0.72
SNX3O60493 AC009299.2-201ENST00000482477 511 ntBASIC19.58■□□□□ 0.72
SNX3O60493 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.58■□□□□ 0.72
SNX3O60493 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.58■□□□□ 0.72
SNX3O60493 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.58■□□□□ 0.72
SNX3O60493 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.58■□□□□ 0.72
SNX3O60493 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SNX3O60493 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.58■□□□□ 0.72
SNX3O60493 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.57■□□□□ 0.72
SNX3O60493 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.57■□□□□ 0.72
SNX3O60493 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SNX3O60493 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
SNX3O60493 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.57■□□□□ 0.72
SNX3O60493 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SNX3O60493 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SNX3O60493 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.56■□□□□ 0.72
SNX3O60493 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SNX3O60493 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.56■□□□□ 0.72
SNX3O60493 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
SNX3O60493 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 BX842568.3-201ENST00000418104 571 ntBASIC19.56■□□□□ 0.72
SNX3O60493 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.56■□□□□ 0.72
SNX3O60493 AP000997.3-201ENST00000623333 2250 ntBASIC19.56■□□□□ 0.72
SNX3O60493 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SNX3O60493 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.56■□□□□ 0.72
SNX3O60493 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.56■□□□□ 0.72
SNX3O60493 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms