Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SOX1O00570 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SOX1O00570 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SOX1O00570 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.32■■□□□ 1
SOX1O00570 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.32■■□□□ 1
SOX1O00570 AC079781.3-201ENST00000449110 356 ntBASIC21.32■■□□□ 1
SOX1O00570 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.32■■□□□ 1
SOX1O00570 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SOX1O00570 AL160237.2-201ENST00000556165 472 ntBASIC21.32■■□□□ 1
SOX1O00570 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.32■■□□□ 1
SOX1O00570 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SOX1O00570 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.32■■□□□ 1
SOX1O00570 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.32■■□□□ 1
SOX1O00570 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SOX1O00570 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.32■■□□□ 1
SOX1O00570 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
SOX1O00570 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
SOX1O00570 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.31■■□□□ 1
SOX1O00570 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.31■■□□□ 1
SOX1O00570 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.31■■□□□ 1
SOX1O00570 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.31■■□□□ 1
SOX1O00570 AL023803.3-201ENST00000615559 522 ntBASIC21.31■■□□□ 1
SOX1O00570 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SOX1O00570 AC093323.1-202ENST00000635031 2045 ntBASIC21.31■■□□□ 1
SOX1O00570 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SOX1O00570 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SOX1O00570 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SOX1O00570 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.3■■□□□ 1
SOX1O00570 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SOX1O00570 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.3■■□□□ 1
SOX1O00570 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC21.3■■□□□ 1
SOX1O00570 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.3■■□□□ 1
SOX1O00570 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.3■■□□□ 1
SOX1O00570 AC131212.4-201ENST00000623606 975 ntBASIC21.3■■□□□ 1
SOX1O00570 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.3■■□□□ 1
SOX1O00570 AC096733.2-201ENST00000609937 1394 ntBASIC21.3■■□□□ 1
SOX1O00570 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.3■■□□□ 1
SOX1O00570 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.3■■□□□ 1
SOX1O00570 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SOX1O00570 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
SOX1O00570 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.29■■□□□ 1
SOX1O00570 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SOX1O00570 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.29■■□□□ 1
SOX1O00570 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SOX1O00570 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.29■■□□□ 1
SOX1O00570 RCC2P6-201ENST00000526625 1557 ntBASIC21.29■■□□□ 1
SOX1O00570 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SOX1O00570 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SOX1O00570 HMGN1P19-201ENST00000436976 333 ntBASIC21.29■■□□□ 1
SOX1O00570 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.29■■□□□ 1
SOX1O00570 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.29■■□□□ 1
SOX1O00570 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
SOX1O00570 AC011298.2-201ENST00000617989 482 ntBASIC21.29■■□□□ 1
SOX1O00570 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.29■■□□□ 1
SOX1O00570 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SOX1O00570 LINC01311-201ENST00000565162 1445 ntBASIC21.29■■□□□ 1
SOX1O00570 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.29■■□□□ 1
SOX1O00570 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.28■■□□□ 1
SOX1O00570 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 YBX1P10-201ENST00000444752 975 ntBASIC21.28■■□□□ 1
SOX1O00570 SPDYE13P-201ENST00000445314 798 ntBASIC21.28■■□□□ 1
SOX1O00570 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.28■■□□□ 1
SOX1O00570 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.28■■□□□ 1
SOX1O00570 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
SOX1O00570 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.28■■□□□ 1
SOX1O00570 SLC25A6P4-201ENST00000586535 553 ntBASIC21.28■■□□□ 1
SOX1O00570 AC117500.6-201ENST00000624871 588 ntBASIC21.28■■□□□ 1
SOX1O00570 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.28■■□□□ 1
SOX1O00570 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.28■■□□□ 1
SOX1O00570 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX1O00570 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.27■■□□□ 1
SOX1O00570 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.27■■□□□ 1
SOX1O00570 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.27■■□□□ 1
SOX1O00570 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.27■■□□□ 1
SOX1O00570 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SOX1O00570 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SOX1O00570 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC21.27■■□□□ 1
SOX1O00570 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC21.27■■□□□ 1
SOX1O00570 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC21.27■■□□□ 1
SOX1O00570 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.27■■□□□ 1
SOX1O00570 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.27■■□□□ 1
SOX1O00570 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SOX1O00570 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.27■■□□□ 1
SOX1O00570 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
SOX1O00570 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SOX1O00570 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SOX1O00570 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
SOX1O00570 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.27■□□□□ 0.99
SOX1O00570 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SOX1O00570 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SOX1O00570 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX1O00570 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX1O00570 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms