Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 Z82202.1-201ENST00000623446 1880 ntBASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49D1C9J1S8 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 MIR638-201ENST00000385237 100 ntBASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 AL591742.1-201ENST00000604433 565 ntBASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49D1C9J1S8 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 TERF1P5-201ENST00000477545 1207 ntBASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49D1C9J1S8 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.89■□□□□ 0.78
TRIM49D1C9J1S8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 KRT8P17-201ENST00000453110 1448 ntBASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49D1C9J1S8 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 AC120498.9-201ENST00000339021 3867 ntBASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 AC016405.3-201ENST00000607710 860 ntBASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 AC010536.3-201ENST00000620306 533 ntBASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TRIM49D1C9J1S8 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms