Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
TRAV1-1A0A0B4J248 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 AC018470.1-201ENST00000624790 3129 ntBASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 POU5F1P4-201ENST00000413175 1085 ntBASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 AC006333.2-201ENST00000607957 2099 ntBASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV1-1A0A0B4J248 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 TSPY9P-201ENST00000440215 945 ntBASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 TSPY11P-201ENST00000442607 1045 ntBASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 AC245052.3-201ENST00000450182 901 ntBASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 AC133561.4-201ENST00000566112 224 ntBASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 AC136469.2-201ENST00000623944 1028 ntBASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
TRAV1-1A0A0B4J248 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV1-1A0A0B4J248 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms