Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC7□□□□□ -1.29
PCDH9Q9HC56 SNX19-202ENST00000426933 888 ntTSL 2 BASIC7□□□□□ -1.29
PCDH9Q9HC56 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC7□□□□□ -1.29
PCDH9Q9HC56 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC7□□□□□ -1.29
PCDH9Q9HC56 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC7□□□□□ -1.29
PCDH9Q9HC56 NMNAT1P3-201ENST00000457517 888 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 SULT1D1P-201ENST00000458020 882 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 BLNK-209ENST00000495266 440 ntTSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC7□□□□□ -1.29
PCDH9Q9HC56 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC7□□□□□ -1.29
PCDH9Q9HC56 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7□□□□□ -1.29
PCDH9Q9HC56 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 FCGR1CP-201ENST00000579737 1127 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 CTSLP2-201ENST00000580501 394 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 WDR45BP1-201ENST00000583470 1029 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 MIR4428-201ENST00000584884 73 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC7□□□□□ -1.29
PCDH9Q9HC56 AC004908.1-201ENST00000606572 541 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 AC005753.1-201ENST00000623837 618 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 CASC22-202ENST00000628396 802 ntTSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 AP002833.3-201ENST00000625075 2265 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC7□□□□□ -1.29
PCDH9Q9HC56 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 OR2A3P-202ENST00000641249 1776 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
PCDH9Q9HC56 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
PCDH9Q9HC56 OR5M2P-202ENST00000641241 4242 ntBASIC7□□□□□ -1.29
PCDH9Q9HC56 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 RNA5SP429-201ENST00000363688 109 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC092646.1-201ENST00000427142 901 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AL645936.2-201ENST00000430565 928 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC245452.2-201ENST00000435222 392 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AL354714.5-201ENST00000450131 590 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC011405.1-203ENST00000510110 1067 ntTSL 3 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AP004607.5-201ENST00000532034 217 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 MIR4301-201ENST00000577203 66 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 RN7SL426P-201ENST00000579106 295 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 OR7A11P-201ENST00000597719 953 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AL512430.4-201ENST00000603085 613 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC027506.1-201ENST00000621395 198 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC117503.3-201ENST00000623811 601 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AL451064.2-201ENST00000623514 1654 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AC122713.2-201ENST00000624942 3335 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 AL512329.1-201ENST00000404600 1592 ntBASIC6.99□□□□□ -1.29
PCDH9Q9HC56 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.99□□□□□ -1.29
PCDH9Q9HC56 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 AL359694.2-201ENST00000567753 1615 ntBASIC6.98□□□□□ -1.29
PCDH9Q9HC56 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 NPM1P14-201ENST00000343743 866 ntBASIC6.98□□□□□ -1.29
PCDH9Q9HC56 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
PCDH9Q9HC56 MIR99A-201ENST00000384906 81 ntBASIC6.98□□□□□ -1.29
PCDH9Q9HC56 MIR27A-201ENST00000385073 78 ntBASIC6.98□□□□□ -1.29
PCDH9Q9HC56 MIR431-201ENST00000385266 114 ntBASIC6.98□□□□□ -1.29
PCDH9Q9HC56 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 164.1 ms