Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC5.73□□□□□ -1.49
CDX1P47902 CASC19-232ENST00000641480 1244 ntBASIC5.73□□□□□ -1.49
CDX1P47902 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC5.73□□□□□ -1.49
CDX1P47902 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CDX1P47902 IARS-205ENST00000443024 4341 ntTSL 5 BASIC5.73□□□□□ -1.49
CDX1P47902 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CDX1P47902 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC5.73□□□□□ -1.49
CDX1P47902 OR5M2P-202ENST00000641241 4242 ntBASIC5.73□□□□□ -1.49
CDX1P47902 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CDX1P47902 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CDX1P47902 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CDX1P47902 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC5.73□□□□□ -1.49
CDX1P47902 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CDX1P47902 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CDX1P47902 AL929601.4-201ENST00000613011 1341 ntBASIC5.73□□□□□ -1.49
CDX1P47902 IMMTP1-201ENST00000435590 2219 ntBASIC5.72□□□□□ -1.49
CDX1P47902 THAP12P8-201ENST00000447914 2115 ntBASIC5.72□□□□□ -1.49
CDX1P47902 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 AL136298.2-201ENST00000556497 1570 ntBASIC5.72□□□□□ -1.49
CDX1P47902 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
CDX1P47902 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 RNA5SP333-201ENST00000363466 118 ntBASIC5.72□□□□□ -1.49
CDX1P47902 RNA5SP334-201ENST00000364825 118 ntBASIC5.72□□□□□ -1.49
CDX1P47902 RNA5SP231-201ENST00000410496 138 ntBASIC5.72□□□□□ -1.49
CDX1P47902 RN7SKP30-201ENST00000411373 334 ntBASIC5.72□□□□□ -1.49
CDX1P47902 NME1P1-201ENST00000420914 382 ntBASIC5.72□□□□□ -1.49
CDX1P47902 HMGB1P32-201ENST00000425971 565 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 RPL5P27-201ENST00000437011 881 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AC114755.4-201ENST00000439114 443 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 FAM177B-204ENST00000445590 1096 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC5.72□□□□□ -1.49
CDX1P47902 SNORA35.1-201ENST00000458908 128 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC5.72□□□□□ -1.49
CDX1P47902 RN7SL751P-201ENST00000473281 284 ntBASIC5.72□□□□□ -1.49
CDX1P47902 RPL17P2-201ENST00000491913 451 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 AC111194.1-201ENST00000509711 422 ntTSL 3 BASIC5.72□□□□□ -1.49
CDX1P47902 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 NDUFA3P2-201ENST00000531434 232 ntBASIC5.72□□□□□ -1.49
CDX1P47902 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC5.72□□□□□ -1.49
CDX1P47902 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC5.72□□□□□ -1.49
CDX1P47902 AC007611.1-202ENST00000564212 854 ntTSL 3 BASIC5.72□□□□□ -1.49
CDX1P47902 RN7SL689P-201ENST00000577215 297 ntBASIC5.72□□□□□ -1.49
CDX1P47902 MIR1273F-201ENST00000580581 99 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AC009303.3-201ENST00000591103 736 ntBASIC5.72□□□□□ -1.49
CDX1P47902 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 AC024451.4-201ENST00000602578 752 ntBASIC5.72□□□□□ -1.49
CDX1P47902 COX6CP16-201ENST00000603667 216 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AL353807.4-201ENST00000604995 257 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AL136139.1-201ENST00000605568 222 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AC023206.1-201ENST00000605824 298 ntBASIC5.72□□□□□ -1.49
CDX1P47902 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC5.72□□□□□ -1.49
CDX1P47902 STARD13-AS-240ENST00000609608 865 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 AP001885.1-201ENST00000621658 558 ntBASIC5.72□□□□□ -1.49
CDX1P47902 uc_338.21-201ENST00000622458 147 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AL596275.2-203ENST00000641951 371 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AP003471.1-202ENST00000319051 1988 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AC004014.2-201ENST00000623718 5122 ntBASIC5.72□□□□□ -1.49
CDX1P47902 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CDX1P47902 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 KYNUP2-201ENST00000582280 1329 ntBASIC5.72□□□□□ -1.49
CDX1P47902 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CDX1P47902 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.72□□□□□ -1.49
CDX1P47902 NCOA4P2-201ENST00000340589 1813 ntBASIC5.71□□□□□ -1.49
CDX1P47902 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
CDX1P47902 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC5.71□□□□□ -1.49
CDX1P47902 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
CDX1P47902 AC067942.1-201ENST00000488045 1493 ntBASIC5.71□□□□□ -1.49
CDX1P47902 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CDX1P47902 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC5.71□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms