Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC113361.1-201ENST00000606683 543 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 AC104184.1-201ENST00000607513 721 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 BX255923.1-201ENST00000613309 681 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 TSHZ2-205ENST00000626626 670 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 AC183089.2-201ENST00000637931 916 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 OR7E161P-202ENST00000641994 1033 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC8.46□□□□□ -1.06
HMGB1P09429 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 HSP90AA2P-201ENST00000530115 2196 ntBASIC8.46□□□□□ -1.06
HMGB1P09429 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC8.46□□□□□ -1.06
HMGB1P09429 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC8.46□□□□□ -1.06
HMGB1P09429 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC8.46□□□□□ -1.06
HMGB1P09429 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC8.46□□□□□ -1.06
HMGB1P09429 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
HMGB1P09429 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 AL359263.1-201ENST00000441188 2796 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC8.45□□□□□ -1.06
HMGB1P09429 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 RNU6-1251P-201ENST00000364502 107 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC8.45□□□□□ -1.06
HMGB1P09429 RNU6-729P-201ENST00000384399 107 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 IGKV3D-11-201ENST00000390277 444 ntAPPRIS P1 BASIC8.45□□□□□ -1.06
HMGB1P09429 AC090114.1-201ENST00000393266 448 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 HCG25-217ENST00000422366 702 ntTSL 3 BASIC8.45□□□□□ -1.06
HMGB1P09429 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 AF274573.1-201ENST00000430535 494 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 GAS5-211ENST00000432536 959 ntTSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC8.45□□□□□ -1.06
HMGB1P09429 IGKV1OR10-1-201ENST00000442306 329 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 AL034399.1-201ENST00000451535 380 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC8.45□□□□□ -1.06
HMGB1P09429 IGKV1OR22-5-201ENST00000458718 354 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 SNORA81.1-201ENST00000458922 177 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC8.45□□□□□ -1.06
HMGB1P09429 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC8.45□□□□□ -1.06
HMGB1P09429 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC8.45□□□□□ -1.06
HMGB1P09429 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC8.45□□□□□ -1.06
HMGB1P09429 AC078860.1-201ENST00000546601 527 ntTSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 FRG2IP-201ENST00000563581 781 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 DCTN5-204ENST00000563998 878 ntTSL 3 BASIC8.45□□□□□ -1.06
HMGB1P09429 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC8.45□□□□□ -1.06
HMGB1P09429 AC061975.3-201ENST00000583209 244 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC8.45□□□□□ -1.06
HMGB1P09429 AC104117.5-201ENST00000606195 547 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 BX005040.2-201ENST00000620504 370 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 AC241377.2-202ENST00000636462 997 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 GTF2IP4-201ENST00000453092 2054 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 SAMMSON-210ENST00000641260 1308 ntBASIC8.45□□□□□ -1.06
HMGB1P09429 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 CAST-202ENST00000325674 3356 ntTSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC8.45□□□□□ -1.06
HMGB1P09429 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
HMGB1P09429 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC8.45□□□□□ -1.06
HMGB1P09429 AC012213.2-201ENST00000562917 4597 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 UGT2B24P-201ENST00000514441 1597 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 AC079178.2-201ENST00000439323 1624 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 AC011416.1-201ENST00000514947 1732 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
HMGB1P09429 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 ST13P16-201ENST00000401760 781 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 RN7SKP236-201ENST00000410635 284 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 AL773545.3-201ENST00000414297 706 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 RPSAP1-201ENST00000421328 880 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC8.44□□□□□ -1.06
HMGB1P09429 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC8.44□□□□□ -1.06
HMGB1P09429 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC8.44□□□□□ -1.06
HMGB1P09429 HMGN1P6-201ENST00000438508 291 ntBASIC8.44□□□□□ -1.06
HMGB1P09429 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
HMGB1P09429 CYCSP44-201ENST00000448560 313 ntBASIC8.44□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 137.9 ms