Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 EEF1A1P20-201ENST00000514852 1386 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 OR7D4-201ENST00000308682 1022 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 RN7SKP271-201ENST00000410528 320 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 CENPN-204ENST00000428963 971 ntTSL 2 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AF274573.1-201ENST00000430535 494 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 PRKAR1AP1-201ENST00000441422 1162 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC018892.2-201ENST00000457656 693 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC010409.2-201ENST00000505780 478 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC005699.1-203ENST00000515286 688 ntTSL 3 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 OR7E154P-201ENST00000525174 932 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 OR5M4P-201ENST00000529436 925 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 UBE2CP4-201ENST00000561405 535 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC099314.1-201ENST00000563916 562 ntTSL 4 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC115989.2-201ENST00000578640 563 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 SNORA70D-201ENST00000578836 135 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 EXOSC3P2-201ENST00000594464 497 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AL031429.2-201ENST00000602605 649 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC099777.1-201ENST00000603779 1070 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AL136139.1-201ENST00000605568 222 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC023206.1-201ENST00000605824 298 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC113361.1-201ENST00000606683 543 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 IFNA5-201ENST00000610521 987 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AL354950.1-201ENST00000614150 568 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 RMDN2-AS1-210ENST00000630021 1053 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC005618.1-201ENST00000606901 3148 ntBASIC5.97□□□□□ -1.45
NKX3-1Q99801 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 SFR1-201ENST00000369727 1438 ntAPPRIS P4 TSL 2 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC5.97□□□□□ -1.45
NKX3-1Q99801 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
NKX3-1Q99801 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.45
NKX3-1Q99801 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
NKX3-1Q99801 CDY19P-201ENST00000411668 1613 ntBASIC5.96□□□□□ -1.45
NKX3-1Q99801 CDY18P-201ENST00000438294 1609 ntBASIC5.96□□□□□ -1.45
NKX3-1Q99801 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.45
NKX3-1Q99801 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.96□□□□□ -1.45
NKX3-1Q99801 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
NKX3-1Q99801 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
NKX3-1Q99801 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 AL117344.1-201ENST00000407196 616 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 RPSAP60-201ENST00000415403 880 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 FECHP1-201ENST00000431896 1214 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 AC011742.2-201ENST00000443818 352 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 BZW1P1-201ENST00000454901 1240 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 AP005202.1-201ENST00000489915 867 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 RN7SL306P-201ENST00000492941 296 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 RN7SL775P-201ENST00000498361 336 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 LECT2-203ENST00000512872 762 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 IGKV1D-32-201ENST00000517449 318 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 AC105202.1-203ENST00000518024 875 ntTSL 3 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 CASP1P2-201ENST00000526830 1258 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 AP006587.5-201ENST00000532033 739 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC5.96□□□□□ -1.46
NKX3-1Q99801 CYCSP1-201ENST00000604815 315 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 AL354718.1-201ENST00000619764 589 ntBASIC5.96□□□□□ -1.46
NKX3-1Q99801 AC103564.3-201ENST00000621194 220 ntBASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms