Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC008708.2-201ENST00000522956 1124 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 CA1-219ENST00000523022 1208 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 LINC02385-201ENST00000547554 428 ntTSL 5 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 LINC02544-201ENST00000564830 544 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 NDUFA5P11-201ENST00000567995 343 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC243312.1-201ENST00000570582 275 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AP005210.1-201ENST00000583659 544 ntTSL 2 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 SLC14A1-214ENST00000589700 1022 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AL158151.4-201ENST00000600965 507 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC129492.5-201ENST00000603489 315 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 FAM72A-208ENST00000607379 1139 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AL121890.3-201ENST00000618494 516 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC007204.1-201ENST00000621794 555 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC116631.1-202ENST00000640984 683 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 OR9K2-204ENST00000641374 1122 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 ING3-204ENST00000431467 1447 ntTSL 2 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 DPH6-202ENST00000440392 3648 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 AC018717.1-201ENST00000457712 1505 ntBASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 MS4A6A-208ENST00000528851 1806 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC8.59□□□□□ -1.03
TRAIPQ9BWF2 HPS5-201ENST00000349215 4491 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 APBB2-224ENST00000513140 4166 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 ODF2-209ENST00000434106 3890 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 ZNF613-201ENST00000293471 3419 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 OR8B9P-202ENST00000642028 5216 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 METTL2A-204ENST00000616852 3150 ntTSL 2 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 PYHIN1-202ENST00000368138 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 BCL6-201ENST00000232014 2710 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 LRRC37A11P-202ENST00000579258 3717 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 TRAF6P1-201ENST00000429404 1558 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 GABRP-203ENST00000518525 3576 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 MEF2A-205ENST00000557942 5413 ntTSL 5 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 WFDC8-201ENST00000289953 1069 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 U3.1-201ENST00000362500 215 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 PHF6-203ENST00000370800 1150 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 RNU1-11P-201ENST00000383975 164 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 MIR513B-201ENST00000385136 84 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 MIR301B-201ENST00000390813 78 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 FCAR-205ENST00000391723 754 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 RPL23AP59-201ENST00000399415 461 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 PPP1R7-204ENST00000402734 883 ntTSL 3 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC246680.2-201ENST00000422106 389 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 OR6K4P-201ENST00000423179 955 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 MED15P9-201ENST00000424716 533 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 HMGA1P4-201ENST00000428643 334 ntTSL 2 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AL353052.1-201ENST00000428673 818 ntTSL 3 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC092170.1-201ENST00000440211 356 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 HIST1H2APS6-201ENST00000448609 364 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 RPS29P5-201ENST00000452777 171 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 CREM-234ENST00000484283 660 ntTSL 5 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC010442.1-201ENST00000515583 816 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 OR4A9P-201ENST00000526326 944 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 THSD4-AS1-204ENST00000566268 468 ntTSL 4 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC090415.1-201ENST00000581877 847 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 GLUD1P2-201ENST00000583339 201 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 GLUD1P8-201ENST00000585063 203 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 CCDC58P3-201ENST00000590792 430 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC008770.1-209ENST00000591898 356 ntTSL 3 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC024060.1-201ENST00000607052 494 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC011374.2-201ENST00000607135 526 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC096586.1-201ENST00000610267 561 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 7SK.12-201ENST00000612820 244 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC123767.1-202ENST00000620407 817 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 RAB3IP-215ENST00000551641 2840 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 COL21A1-212ENST00000535941 3369 ntAPPRIS ALT1 TSL 5 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC127502.2-201ENST00000602663 2351 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AOAH-210ENST00000617267 2398 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC107021.2-201ENST00000567714 2095 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 CHURC1-203ENST00000549115 2629 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 MTRF1-202ENST00000379477 1948 ntAPPRIS P1 TSL 2 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 AC010886.1-201ENST00000437380 2869 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 PARP4P1-201ENST00000435945 2337 ntBASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 PIGN-231ENST00000639174 4095 ntTSL 5 BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 SLC22A10-201ENST00000332793 2026 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
TRAIPQ9BWF2 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC8.58□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms