Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 RPS7P1-201ENST00000571702 585 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 GTF2IP6-201ENST00000583143 541 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 AL121985.3-201ENST00000620690 523 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 AC006387.1-201ENST00000626365 671 ntTSL 5 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 AL596244.1-201ENST00000567068 3779 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HLA-DMBP28068 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
HLA-DMBP28068 DYDC2-201ENST00000256039 1842 ntAPPRIS P3 TSL 2 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 CLCA3P-203ENST00000490028 2781 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 ASNSP6-201ENST00000592770 1618 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HLA-DMBP28068 AC007938.1-201ENST00000562524 2902 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HLA-DMBP28068 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HLA-DMBP28068 AC009135.2-201ENST00000624136 1768 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HLA-DMBP28068 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC5.29□□□□□ -1.56
HLA-DMBP28068 EEF1A1P20-201ENST00000514852 1386 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 MAPK10-379ENST00000642013 1385 ntBASIC5.29□□□□□ -1.56
HLA-DMBP28068 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HLA-DMBP28068 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 C6orf106-201ENST00000374021 916 ntAPPRIS ALT2 TSL 3 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 LINC02243-201ENST00000441841 961 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 SNORA35.1-201ENST00000458908 128 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 TUBBP11-201ENST00000472255 252 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 RN7SL392P-201ENST00000473024 299 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 RN7SL306P-201ENST00000492941 296 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC018639.1-201ENST00000492994 442 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 RN7SL775P-201ENST00000498361 336 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 EEF1B2P2-201ENST00000519625 676 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 OR7E154P-201ENST00000525174 932 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 NF1P12-201ENST00000549593 583 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC018558.5-201ENST00000565840 952 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 EEF1B2P1-201ENST00000567221 672 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC111186.1-201ENST00000604684 130 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AL513218.1-201ENST00000606527 391 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC113361.1-201ENST00000606683 543 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC027271.1-201ENST00000610270 610 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 OR7E161P-202ENST00000641994 1033 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 AC078880.4-201ENST00000617627 1749 ntBASIC5.28□□□□□ -1.56
HLA-DMBP28068 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HLA-DMBP28068 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC5.28□□□□□ -1.56
HLA-DMBP28068 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HLA-DMBP28068 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC5.27□□□□□ -1.57
HLA-DMBP28068 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HLA-DMBP28068 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
HLA-DMBP28068 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
HLA-DMBP28068 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
HLA-DMBP28068 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
HLA-DMBP28068 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HLA-DMBP28068 MIR431-201ENST00000385266 114 ntBASIC5.27□□□□□ -1.57
HLA-DMBP28068 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
HLA-DMBP28068 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HLA-DMBP28068 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms