Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC8.57□□□□□ -1.04
HMGB1P09429 AF186192.2-204ENST00000581667 524 ntBASIC8.57□□□□□ -1.04
HMGB1P09429 AC008385.1-201ENST00000604421 355 ntBASIC8.57□□□□□ -1.04
HMGB1P09429 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC8.57□□□□□ -1.04
HMGB1P09429 HOTTIP_2.1-201ENST00000616633 376 ntBASIC8.57□□□□□ -1.04
HMGB1P09429 AF117829.2-201ENST00000619538 361 ntBASIC8.57□□□□□ -1.04
HMGB1P09429 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC8.57□□□□□ -1.04
HMGB1P09429 5_8S_rRNA.6-201ENST00000637374 152 ntBASIC8.57□□□□□ -1.04
HMGB1P09429 OR10G8-202ENST00000641224 1033 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
HMGB1P09429 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC8.57□□□□□ -1.04
HMGB1P09429 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC8.57□□□□□ -1.04
HMGB1P09429 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
HMGB1P09429 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
HMGB1P09429 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
HMGB1P09429 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
HMGB1P09429 AC091544.5-201ENST00000620192 3815 ntBASIC8.57□□□□□ -1.04
HMGB1P09429 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC8.57□□□□□ -1.04
HMGB1P09429 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
HMGB1P09429 PARP4P1-201ENST00000435945 2337 ntBASIC8.57□□□□□ -1.04
HMGB1P09429 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HMGB1P09429 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
HMGB1P09429 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC8.56□□□□□ -1.04
HMGB1P09429 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC8.56□□□□□ -1.04
HMGB1P09429 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC8.56□□□□□ -1.04
HMGB1P09429 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 OR2G6-201ENST00000343414 1049 ntAPPRIS P1 BASIC8.56□□□□□ -1.04
HMGB1P09429 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC8.56□□□□□ -1.04
HMGB1P09429 SNORA70.8-201ENST00000384231 136 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 RNA5SP105-201ENST00000391123 113 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 AL158070.1-201ENST00000421614 631 ntTSL 2 BASIC8.56□□□□□ -1.04
HMGB1P09429 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC8.56□□□□□ -1.04
HMGB1P09429 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC8.56□□□□□ -1.04
HMGB1P09429 RPS21P1-201ENST00000434479 247 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 FDPSP8-201ENST00000438304 1089 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 AC079781.1-201ENST00000441505 394 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 AL022068.1-208ENST00000447250 1016 ntTSL 2 BASIC8.56□□□□□ -1.04
HMGB1P09429 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC8.56□□□□□ -1.04
HMGB1P09429 RN7SL647P-201ENST00000485429 300 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 OR11I1P-201ENST00000486033 954 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 PSMA2P2-201ENST00000504319 686 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 AC008417.1-201ENST00000510014 565 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 AC009879.1-201ENST00000520029 839 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 ATP5J2P4-201ENST00000538774 267 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 OR4N3P-201ENST00000559395 818 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 EEF1B2P1-201ENST00000567221 672 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 AL445649.1-201ENST00000615941 691 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 MIR6807-201ENST00000621968 92 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 AC135068.4-201ENST00000622949 925 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC8.56□□□□□ -1.04
HMGB1P09429 PFKM-232ENST00000629846 381 ntTSL 4 BASIC8.56□□□□□ -1.04
HMGB1P09429 AC073488.7-201ENST00000633785 778 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC8.56□□□□□ -1.04
HMGB1P09429 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
HMGB1P09429 TMC3-AS1-206ENST00000612811 2726 ntBASIC8.56□□□□□ -1.04
HMGB1P09429 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC8.56□□□□□ -1.04
HMGB1P09429 APP-206ENST00000359726 3294 ntTSL 2 BASIC8.56□□□□□ -1.04
HMGB1P09429 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC8.56□□□□□ -1.04
HMGB1P09429 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
HMGB1P09429 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 TEK-204ENST00000519097 3836 ntTSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC8.55□□□□□ -1.04
HMGB1P09429 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC8.55□□□□□ -1.04
HMGB1P09429 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC8.55□□□□□ -1.04
HMGB1P09429 SALL4P7-201ENST00000555779 3120 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 DYNC1I2P1-201ENST00000435916 1838 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 AL138847.1-201ENST00000258651 546 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 RNU6-670P-201ENST00000364312 104 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 RNU6-1055P-201ENST00000391085 107 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 AC023141.1-201ENST00000419418 379 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC8.55□□□□□ -1.04
HMGB1P09429 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC8.55□□□□□ -1.04
HMGB1P09429 EAF2-202ENST00000451944 960 ntTSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC8.55□□□□□ -1.04
HMGB1P09429 AC004692.1-201ENST00000455430 424 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 PANCR-201ENST00000503456 493 ntTSL 5 BASIC8.55□□□□□ -1.04
HMGB1P09429 AP002026.1-204ENST00000506454 749 ntTSL 3 BASIC8.55□□□□□ -1.04
HMGB1P09429 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 ASNSP4-201ENST00000511103 447 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC8.55□□□□□ -1.04
HMGB1P09429 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HMGB1P09429 PEX11A-205ENST00000561257 978 ntTSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 FAM106CP-201ENST00000582212 507 ntBASIC8.55□□□□□ -1.04
HMGB1P09429 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC8.55□□□□□ -1.04
HMGB1P09429 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC8.55□□□□□ -1.04
HMGB1P09429 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC8.55□□□□□ -1.04
HMGB1P09429 AL139123.1-201ENST00000612008 430 ntBASIC8.55□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms