Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FAM120B-203ENST00000537664 3212 ntAPPRIS ALT2 TSL 2 BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 SORCS1-202ENST00000344440 3009 ntTSL 5 BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 TMCC1-202ENST00000426664 5484 ntTSL 5 BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 TMEM182-203ENST00000412401 3593 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC8.66□□□□□ -1.02
TRAIPQ9BWF2 PTER-203ENST00000423462 3212 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 GABRE-201ENST00000370328 3152 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 FLG-AS1-202ENST00000392688 2995 ntTSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 GIMAP2-201ENST00000223293 1449 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 PIWIL3-201ENST00000332271 3504 ntAPPRIS P2 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 SOX6-210ENST00000528252 2707 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 ANKS1B-220ENST00000550693 3372 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 UBE2Q2P1-202ENST00000354771 883 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 HBS1L-202ENST00000367820 638 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 MIR106B-201ENST00000385301 82 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 TRAV6-201ENST00000390428 404 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 RNA5SP18-201ENST00000390935 121 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 RNU6-932P-201ENST00000391108 106 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 S100A13-202ENST00000392622 547 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AL353151.1-201ENST00000402406 604 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 RN7SKP97-201ENST00000410966 333 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 ST13P13-201ENST00000417082 1092 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC234781.4-201ENST00000419384 244 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 NAP1L4P2-201ENST00000425958 899 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AL604028.1-201ENST00000430643 598 ntTSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 GTF2IP3-201ENST00000433887 494 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 LSM3P3-201ENST00000436601 306 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 LINC00350-201ENST00000438640 422 ntTSL 5 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 CYP2C56P-201ENST00000440076 291 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AL592437.1-201ENST00000443781 492 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC009970.1-201ENST00000444873 432 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 RPSAP49-201ENST00000445182 886 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC009955.1-201ENST00000455896 271 ntTSL 5 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AL592464.2-201ENST00000457440 607 ntTSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 NDUFB4P1-201ENST00000462398 381 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AL157777.1-201ENST00000468100 304 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 H3F3AP5-201ENST00000475267 429 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 PDPN-205ENST00000487038 607 ntTSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC073610.1-201ENST00000489971 396 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 LINC01096-201ENST00000501050 1263 ntTSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC113420.1-201ENST00000507903 571 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC008837.1-201ENST00000511513 412 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC068898.2-201ENST00000514425 597 ntTSL 4 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 RN7SKP253-201ENST00000516424 309 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 OR4U1P-201ENST00000554958 912 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC090888.2-201ENST00000559765 1144 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC142086.3-201ENST00000563896 802 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC025283.1-201ENST00000572039 734 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 RN7SL786P-201ENST00000579130 298 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC005412.1-201ENST00000580812 1049 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 STARD6-204ENST00000584040 660 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 LINC02532-210ENST00000606430 584 ntTSL 4 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AL133351.5-201ENST00000612789 106 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC073569.3-201ENST00000619055 682 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AC017104.5-201ENST00000637647 639 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 AL596275.2-207ENST00000641188 675 ntBASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 MYO1B-201ENST00000304164 4933 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 HCG18-238ENST00000449544 4262 ntTSL 2 BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 UGT2B28-201ENST00000335568 1833 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 ZNF45-204ENST00000589703 2409 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
TRAIPQ9BWF2 EYA4-213ENST00000531901 2892 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 CCDC77-202ENST00000412006 2253 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 ARHGAP1-201ENST00000311956 3375 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 RAD51B-211ENST00000487861 1673 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 KIAA1217-201ENST00000307544 3281 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 AL109811.1-201ENST00000452378 2682 ntTSL 2 BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
TRAIPQ9BWF2 NOS1-202ENST00000338101 4462 ntTSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 OPRM1-205ENST00000414028 2485 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 TSC22D1-213ENST00000622051 2872 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 ZNF252P-201ENST00000426361 5210 ntTSL 4 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 LINC01105-203ENST00000431188 3329 ntTSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 CYP2C19-202ENST00000480405 1417 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 ZNF793-208ENST00000588578 4549 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms