Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 AC023632.3-201ENST00000521633 145 ntBASIC18.91■□□□□ 0.62
SCN3AQ9NY46 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SCN3AQ9NY46 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 FAM201B-201ENST00000458407 597 ntBASIC18.9■□□□□ 0.62
SCN3AQ9NY46 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SCN3AQ9NY46 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SCN3AQ9NY46 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.89■□□□□ 0.62
SCN3AQ9NY46 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SCN3AQ9NY46 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.62
SCN3AQ9NY46 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 TCF3P1-201ENST00000423021 1937 ntBASIC18.89■□□□□ 0.61
SCN3AQ9NY46 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 AC098590.1-201ENST00000468126 897 ntBASIC18.89■□□□□ 0.61
SCN3AQ9NY46 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SCN3AQ9NY46 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 AL121906.2-201ENST00000621597 723 ntBASIC18.88■□□□□ 0.61
SCN3AQ9NY46 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 RPS2P52-201ENST00000469610 820 ntBASIC18.88■□□□□ 0.61
SCN3AQ9NY46 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms