Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 AC098818.2-201ENST00000564925 2320 ntBASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 AC007322.1-201ENST00000426983 750 ntBASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HERPUD2Q9BSE4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 AC231657.2-201ENST00000624556 255 ntBASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HERPUD2Q9BSE4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HERPUD2Q9BSE4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.64■□□□□ 0.9
HERPUD2Q9BSE4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HERPUD2Q9BSE4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HERPUD2Q9BSE4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HERPUD2Q9BSE4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 ID1-201ENST00000376105 1233 ntBASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.64■□□□□ 0.89
HERPUD2Q9BSE4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 AC006970.2-201ENST00000450065 779 ntBASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 AC069236.1-201ENST00000604339 616 ntBASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 RNF165-205ENST00000588679 2904 ntBASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.63■□□□□ 0.89
HERPUD2Q9BSE4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 AL050303.2-201ENST00000619798 666 ntBASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HERPUD2Q9BSE4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms