Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.41■□□□□ 0.86
SKA1Q96BD8 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.41■□□□□ 0.86
SKA1Q96BD8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 FAM197Y4-202ENST00000622692 608 ntBASIC20.41■□□□□ 0.86
SKA1Q96BD8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.41■□□□□ 0.86
SKA1Q96BD8 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.41■□□□□ 0.86
SKA1Q96BD8 AL512408.1-201ENST00000569378 2000 ntBASIC20.41■□□□□ 0.86
SKA1Q96BD8 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SKA1Q96BD8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 MIR718-201ENST00000390190 70 ntBASIC20.4■□□□□ 0.86
SKA1Q96BD8 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.4■□□□□ 0.86
SKA1Q96BD8 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SKA1Q96BD8 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
SKA1Q96BD8 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
SKA1Q96BD8 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SKA1Q96BD8 AC116050.2-201ENST00000612102 1779 ntBASIC20.39■□□□□ 0.86
SKA1Q96BD8 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.39■□□□□ 0.86
SKA1Q96BD8 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SKA1Q96BD8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.39■□□□□ 0.85
SKA1Q96BD8 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SKA1Q96BD8 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SKA1Q96BD8 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SKA1Q96BD8 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SKA1Q96BD8 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SKA1Q96BD8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SKA1Q96BD8 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SKA1Q96BD8 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.39■□□□□ 0.85
SKA1Q96BD8 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.38■□□□□ 0.85
SKA1Q96BD8 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.38■□□□□ 0.85
SKA1Q96BD8 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.38■□□□□ 0.85
SKA1Q96BD8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.38■□□□□ 0.85
SKA1Q96BD8 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.38■□□□□ 0.85
SKA1Q96BD8 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 AC121338.2-201ENST00000622535 1744 ntBASIC20.38■□□□□ 0.85
SKA1Q96BD8 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SKA1Q96BD8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SKA1Q96BD8 CYP21A1P-202ENST00000354927 1481 ntBASIC20.37■□□□□ 0.85
SKA1Q96BD8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SKA1Q96BD8 PGM5P4-201ENST00000421970 445 ntBASIC20.37■□□□□ 0.85
SKA1Q96BD8 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.37■□□□□ 0.85
SKA1Q96BD8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms