Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB4Q8WW32 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGB4Q8WW32 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB4Q8WW32 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGB4Q8WW32 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGB4Q8WW32 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.05■□□□□ 0.8
HMGB4Q8WW32 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 AL121603.2-201ENST00000557373 2117 ntBASIC20.04■□□□□ 0.8
HMGB4Q8WW32 AC145285.6-201ENST00000604632 637 ntBASIC20.04■□□□□ 0.8
HMGB4Q8WW32 AL445228.2-201ENST00000605589 952 ntBASIC20.04■□□□□ 0.8
HMGB4Q8WW32 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB4Q8WW32 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 PKD1P6-201ENST00000343738 4769 ntBASIC20.03■□□□□ 0.8
HMGB4Q8WW32 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 AC005363.2-201ENST00000618631 242 ntBASIC20.03■□□□□ 0.8
HMGB4Q8WW32 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB4Q8WW32 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 NIFKP9-201ENST00000419265 221 ntBASIC20.02■□□□□ 0.8
HMGB4Q8WW32 AL390955.1-201ENST00000428694 934 ntBASIC20.02■□□□□ 0.8
HMGB4Q8WW32 KSR1P1-201ENST00000446298 240 ntBASIC20.02■□□□□ 0.8
HMGB4Q8WW32 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB4Q8WW32 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGB4Q8WW32 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.02■□□□□ 0.79
HMGB4Q8WW32 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGB4Q8WW32 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGB4Q8WW32 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.79
HMGB4Q8WW32 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.02■□□□□ 0.79
HMGB4Q8WW32 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 KRT16P1-201ENST00000399124 1418 ntBASIC20.01■□□□□ 0.79
HMGB4Q8WW32 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB4Q8WW32 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB4Q8WW32 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB4Q8WW32 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB4Q8WW32 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGB4Q8WW32 LINC01568-207ENST00000641790 1380 ntBASIC20■□□□□ 0.79
HMGB4Q8WW32 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB4Q8WW32 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB4Q8WW32 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20■□□□□ 0.79
HMGB4Q8WW32 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20■□□□□ 0.79
HMGB4Q8WW32 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGB4Q8WW32 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGB4Q8WW32 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms