Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 AP003097.1-201ENST00000530657 1135 ntBASIC20.47■□□□□ 0.87
RTL3Q8N8U3 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 AC008687.6-201ENST00000596318 630 ntBASIC20.47■□□□□ 0.87
RTL3Q8N8U3 AC008403.3-201ENST00000598924 454 ntBASIC20.47■□□□□ 0.87
RTL3Q8N8U3 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.47■□□□□ 0.87
RTL3Q8N8U3 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 AC026366.1-201ENST00000488803 879 ntBASIC20.46■□□□□ 0.87
RTL3Q8N8U3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 TCF3P1-201ENST00000423021 1937 ntBASIC20.46■□□□□ 0.87
RTL3Q8N8U3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.46■□□□□ 0.87
RTL3Q8N8U3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.87
RTL3Q8N8U3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 AL691432.2-201ENST00000607222 2038 ntBASIC20.45■□□□□ 0.86
RTL3Q8N8U3 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 MIR4651-201ENST00000582622 73 ntBASIC20.45■□□□□ 0.86
RTL3Q8N8U3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 AC120498.8-201ENST00000614275 531 ntBASIC20.45■□□□□ 0.86
RTL3Q8N8U3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RTL3Q8N8U3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 AC112907.3-201ENST00000577781 2400 ntBASIC20.44■□□□□ 0.86
RTL3Q8N8U3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 RPS2P52-201ENST00000469610 820 ntBASIC20.44■□□□□ 0.86
RTL3Q8N8U3 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
RTL3Q8N8U3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms