Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 AC061975.6-201ENST00000579045 1553 ntBASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 AC006015.1-201ENST00000429970 570 ntBASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 EEF1DP3-203ENST00000566025 782 ntBASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
DEPDC4Q8N2C3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 AC104187.1-201ENST00000607510 612 ntBASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 MIR2861-201ENST00000636310 90 ntBASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
DEPDC4Q8N2C3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 AC005332.7-201ENST00000614046 2005 ntBASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 AC080038.1-201ENST00000611274 1154 ntBASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
DEPDC4Q8N2C3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.54
DEPDC4Q8N2C3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.46■□□□□ 0.54
DEPDC4Q8N2C3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
DEPDC4Q8N2C3 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms