Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.49■□□□□ 0.71
PTCHD3Q3KNS1 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
PTCHD3Q3KNS1 AFG3L1P-217ENST00000557444 2447 ntBASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 KRT18P29-201ENST00000397031 1267 ntBASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 ESRRAP1-201ENST00000400596 1257 ntBASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 AL691432.2-201ENST00000607222 2038 ntBASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTCHD3Q3KNS1 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 KRT8P17-201ENST00000453110 1448 ntBASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
PTCHD3Q3KNS1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 AC008687.6-201ENST00000596318 630 ntBASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 ITM2C-210ENST00000620962 501 ntBASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.45■□□□□ 0.7
PTCHD3Q3KNS1 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms