Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGCS1Q01581 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HMGCS1Q01581 AC004911.1-201ENST00000416316 871 ntBASIC19.2■□□□□ 0.66
HMGCS1Q01581 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.2■□□□□ 0.66
HMGCS1Q01581 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGCS1Q01581 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGCS1Q01581 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.2■□□□□ 0.66
HMGCS1Q01581 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGCS1Q01581 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 KRT8P17-201ENST00000453110 1448 ntBASIC19.19■□□□□ 0.66
HMGCS1Q01581 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGCS1Q01581 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGCS1Q01581 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGCS1Q01581 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGCS1Q01581 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGCS1Q01581 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.18■□□□□ 0.66
HMGCS1Q01581 AC093787.1-201ENST00000450396 207 ntBASIC19.18■□□□□ 0.66
HMGCS1Q01581 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGCS1Q01581 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGCS1Q01581 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGCS1Q01581 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.18■□□□□ 0.66
HMGCS1Q01581 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 AC010980.2-201ENST00000587099 1412 ntBASIC19.17■□□□□ 0.66
HMGCS1Q01581 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGCS1Q01581 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
HMGCS1Q01581 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGCS1Q01581 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGCS1Q01581 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGCS1Q01581 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
HMGCS1Q01581 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HMGCS1Q01581 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.17■□□□□ 0.66
HMGCS1Q01581 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS1Q01581 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 AC005181.1-201ENST00000604782 1256 ntBASIC19.16■□□□□ 0.66
HMGCS1Q01581 AL031963.3-201ENST00000606441 850 ntBASIC19.16■□□□□ 0.66
HMGCS1Q01581 OR10C1-204ENST00000622521 1039 ntBASIC19.16■□□□□ 0.66
HMGCS1Q01581 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS1Q01581 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGCS1Q01581 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms