Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN1P58418 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CLRN1P58418 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CLRN1P58418 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.81■□□□□ 0.44
CLRN1P58418 SLC29A4P1-201ENST00000398760 971 ntBASIC17.81■□□□□ 0.44
CLRN1P58418 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.81■□□□□ 0.44
CLRN1P58418 AC083906.2-201ENST00000511578 360 ntBASIC17.81■□□□□ 0.44
CLRN1P58418 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CLRN1P58418 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.81■□□□□ 0.44
CLRN1P58418 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.81■□□□□ 0.44
CLRN1P58418 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.81■□□□□ 0.44
CLRN1P58418 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.81■□□□□ 0.44
CLRN1P58418 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
CLRN1P58418 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CLRN1P58418 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN1P58418 KRT8P20-201ENST00000423953 1409 ntBASIC17.81■□□□□ 0.44
CLRN1P58418 KRT8P17-201ENST00000453110 1448 ntBASIC17.81■□□□□ 0.44
CLRN1P58418 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CLRN1P58418 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.8■□□□□ 0.44
CLRN1P58418 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.8■□□□□ 0.44
CLRN1P58418 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.8■□□□□ 0.44
CLRN1P58418 HLA-G-202ENST00000376815 851 ntBASIC17.8■□□□□ 0.44
CLRN1P58418 HLA-G-203ENST00000376818 1127 ntBASIC17.8■□□□□ 0.44
CLRN1P58418 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.8■□□□□ 0.44
CLRN1P58418 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.8■□□□□ 0.44
CLRN1P58418 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.8■□□□□ 0.44
CLRN1P58418 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.8■□□□□ 0.44
CLRN1P58418 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CLRN1P58418 AL031963.3-201ENST00000606441 850 ntBASIC17.8■□□□□ 0.44
CLRN1P58418 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.8■□□□□ 0.44
CLRN1P58418 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CLRN1P58418 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.8■□□□□ 0.44
CLRN1P58418 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN1P58418 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
CLRN1P58418 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.79■□□□□ 0.44
CLRN1P58418 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.79■□□□□ 0.44
CLRN1P58418 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN1P58418 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.79■□□□□ 0.44
CLRN1P58418 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN1P58418 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLRN1P58418 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN1P58418 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.79■□□□□ 0.44
CLRN1P58418 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CLRN1P58418 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN1P58418 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.79■□□□□ 0.44
CLRN1P58418 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN1P58418 KRT16P6-202ENST00000425692 1426 ntBASIC17.79■□□□□ 0.44
CLRN1P58418 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.79■□□□□ 0.44
CLRN1P58418 PTBP1P-201ENST00000554374 1601 ntBASIC17.79■□□□□ 0.44
CLRN1P58418 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN1P58418 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN1P58418 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN1P58418 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CLRN1P58418 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.78■□□□□ 0.44
CLRN1P58418 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.78■□□□□ 0.44
CLRN1P58418 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CLRN1P58418 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CLRN1P58418 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CLRN1P58418 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN1P58418 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CLRN1P58418 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN1P58418 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.77■□□□□ 0.44
CLRN1P58418 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CLRN1P58418 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms