Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 GPX1P1-201ENST00000388829 606 ntBASIC20.73■□□□□ 0.91
CDH6P55285 MIPEPP3-201ENST00000412105 444 ntBASIC20.73■□□□□ 0.91
CDH6P55285 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.73■□□□□ 0.91
CDH6P55285 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.73■□□□□ 0.91
CDH6P55285 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.73■□□□□ 0.91
CDH6P55285 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CDH6P55285 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.73■□□□□ 0.91
CDH6P55285 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CDH6P55285 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH6P55285 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CDH6P55285 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CDH6P55285 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.72■□□□□ 0.91
CDH6P55285 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDH6P55285 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.72■□□□□ 0.91
CDH6P55285 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CDH6P55285 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDH6P55285 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDH6P55285 HLA-G-202ENST00000376815 851 ntBASIC20.72■□□□□ 0.91
CDH6P55285 HLA-G-203ENST00000376818 1127 ntBASIC20.72■□□□□ 0.91
CDH6P55285 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CDH6P55285 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CDH6P55285 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CDH6P55285 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.72■□□□□ 0.91
CDH6P55285 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.72■□□□□ 0.91
CDH6P55285 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.72■□□□□ 0.91
CDH6P55285 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDH6P55285 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.72■□□□□ 0.91
CDH6P55285 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CDH6P55285 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDH6P55285 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CDH6P55285 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.71■□□□□ 0.91
CDH6P55285 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CDH6P55285 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 TMEM179-206ENST00000616017 1645 ntBASIC20.71■□□□□ 0.91
CDH6P55285 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.71■□□□□ 0.91
CDH6P55285 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.71■□□□□ 0.91
CDH6P55285 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CDH6P55285 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH6P55285 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CDH6P55285 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CDH6P55285 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CDH6P55285 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
CDH6P55285 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 SLC29A4P1-201ENST00000398760 971 ntBASIC20.7■□□□□ 0.9
CDH6P55285 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.7■□□□□ 0.9
CDH6P55285 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.7■□□□□ 0.9
CDH6P55285 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.7■□□□□ 0.9
CDH6P55285 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.7■□□□□ 0.9
CDH6P55285 AC023632.3-201ENST00000521633 145 ntBASIC20.7■□□□□ 0.9
CDH6P55285 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CDH6P55285 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.7■□□□□ 0.9
CDH6P55285 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.7■□□□□ 0.9
CDH6P55285 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 AC125437.2-201ENST00000625180 2167 ntBASIC20.7■□□□□ 0.9
CDH6P55285 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.7■□□□□ 0.9
CDH6P55285 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CDH6P55285 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.7■□□□□ 0.9
CDH6P55285 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH6P55285 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.69■□□□□ 0.9
CDH6P55285 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.69■□□□□ 0.9
CDH6P55285 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH6P55285 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH6P55285 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms