Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.33■■□□□ 1.01
VCPP55072 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.33■■□□□ 1.01
VCPP55072 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VCPP55072 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.33■■□□□ 1.01
VCPP55072 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.33■■□□□ 1.01
VCPP55072 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.33■■□□□ 1
VCPP55072 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
VCPP55072 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VCPP55072 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.33■■□□□ 1
VCPP55072 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VCPP55072 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VCPP55072 FP700111.2-201ENST00000619190 1892 ntBASIC21.32■■□□□ 1
VCPP55072 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
VCPP55072 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.32■■□□□ 1
VCPP55072 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.32■■□□□ 1
VCPP55072 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.32■■□□□ 1
VCPP55072 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.32■■□□□ 1
VCPP55072 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.32■■□□□ 1
VCPP55072 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.32■■□□□ 1
VCPP55072 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.32■■□□□ 1
VCPP55072 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.32■■□□□ 1
VCPP55072 MIR4785-201ENST00000585005 73 ntBASIC21.32■■□□□ 1
VCPP55072 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.32■■□□□ 1
VCPP55072 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.32■■□□□ 1
VCPP55072 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.32■■□□□ 1
VCPP55072 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.32■■□□□ 1
VCPP55072 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.31■■□□□ 1
VCPP55072 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.31■■□□□ 1
VCPP55072 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.31■■□□□ 1
VCPP55072 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.31■■□□□ 1
VCPP55072 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
VCPP55072 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VCPP55072 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.3■■□□□ 1
VCPP55072 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
VCPP55072 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
VCPP55072 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.3■■□□□ 1
VCPP55072 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.3■■□□□ 1
VCPP55072 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.3■■□□□ 1
VCPP55072 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.3■■□□□ 1
VCPP55072 AL355075.4-201ENST00000554988 638 ntBASIC21.3■■□□□ 1
VCPP55072 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.3■■□□□ 1
VCPP55072 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VCPP55072 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.3■■□□□ 1
VCPP55072 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.3■■□□□ 1
VCPP55072 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VCPP55072 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
VCPP55072 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VCPP55072 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VCPP55072 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
VCPP55072 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.29■■□□□ 1
VCPP55072 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.29■■□□□ 1
VCPP55072 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.29■■□□□ 1
VCPP55072 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.29■■□□□ 1
VCPP55072 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VCPP55072 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.28■■□□□ 1
VCPP55072 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.28■■□□□ 1
VCPP55072 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
VCPP55072 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 POM121L13P-201ENST00000422362 380 ntBASIC21.28■■□□□ 1
VCPP55072 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.28■■□□□ 1
VCPP55072 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
VCPP55072 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms